rs16819282 SNP Detail

Summary

• ID
  rs16819282
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167810 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CCAAA GAACAGAAGA CTCCCAATCC
  Y
  TCAGCCCAAA TGCTATCTCA ACGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774804	Nr4a1_JC9945_3	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819282					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167810 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	1969 bp downstream
Rr510002	regulatory region 510002	1357 bp distal
Tssr133220	transcription start site region 133220	1938 bp downstream
Tssr133221	transcription start site region 133221	1878 bp downstream
Tssr133222	transcription start site region 133222	513 bp downstream
Tssr133223	transcription start site region 133223	147 bp upstream
Tssr133224	transcription start site region 133224	190 bp upstream
Tssr133225	transcription start site region 133225	201 bp upstream
Tssr133226	transcription start site region 133226	222 bp upstream
Tssr133227	transcription start site region 133227	230 bp upstream
Tssr133228	transcription start site region 133228	248 bp upstream
Tssr133229	transcription start site region 133229	259 bp upstream
Tssr133230	transcription start site region 133230	337 bp upstream
Tssr133231	transcription start site region 133231	369 bp upstream
Tssr133232	transcription start site region 133232	388 bp upstream
Tssr133233	transcription start site region 133233	416 bp upstream
Tssr133234	transcription start site region 133234	434 bp upstream
Tssr133235	transcription start site region 133235	467 bp upstream
Tssr133236	transcription start site region 133236	516 bp upstream
Tssr133237	transcription start site region 133237	538 bp upstream
Tssr133238	transcription start site region 133238	571 bp upstream
Tssr133239	transcription start site region 133239	613 bp upstream
Tssr133240	transcription start site region 133240	705 bp upstream
Tssr133241	transcription start site region 133241	722 bp upstream
Tssr133242	transcription start site region 133242	730 bp upstream
Tssr133243	transcription start site region 133243	756 bp upstream
Tssr133244	transcription start site region 133244	777 bp upstream
Tssr133245	transcription start site region 133245	821 bp upstream
Tssr133246	transcription start site region 133246	846 bp upstream
Tssr133247	transcription start site region 133247	934 bp upstream
Tssr133248	transcription start site region 133248	954 bp upstream
Tssr133249	transcription start site region 133249	1805 bp upstream
Tssr133250	transcription start site region 133250	1839 bp upstream
Tssr133251	transcription start site region 133251	1870 bp upstream
Tssr136545	transcription start site region 136545	370 bp downstream
Tssr136546	transcription start site region 136546	492 bp downstream
Tssr136547	transcription start site region 136547	568 bp downstream
Tssr136548	transcription start site region 136548	578 bp downstream
Tssr136549	transcription start site region 136549	612 bp downstream
Tssr136550	transcription start site region 136550	718 bp downstream
Tssr136551	transcription start site region 136551	794 bp downstream