rs16819283 SNP Detail

Summary

• ID
  rs16819283
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167805 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAACA GAAGACTCCC AATCCCTCAG
  Y
  CCAAATGCTA TCTCAACGAG TCACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774805	Nr4a1_JC9945_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819283					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167805 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nr4a1	nuclear receptor subfamily 4, group A, member 1			Intron
				Noncoding-Transcript-Variant
Rr370021	regulatory region 370021			1964 bp downstream
Rr510002	regulatory region 510002			1352 bp distal
Tssr133220	transcription start site region 133220			1933 bp downstream
Tssr133221	transcription start site region 133221			1873 bp downstream
Tssr133222	transcription start site region 133222			508 bp downstream
Tssr133223	transcription start site region 133223			152 bp upstream
Tssr133224	transcription start site region 133224			195 bp upstream
Tssr133225	transcription start site region 133225			206 bp upstream
Tssr133226	transcription start site region 133226			227 bp upstream
Tssr133227	transcription start site region 133227			235 bp upstream
Tssr133228	transcription start site region 133228			253 bp upstream
Tssr133229	transcription start site region 133229			264 bp upstream
Tssr133230	transcription start site region 133230			342 bp upstream
Tssr133231	transcription start site region 133231			374 bp upstream
Tssr133232	transcription start site region 133232			393 bp upstream
Tssr133233	transcription start site region 133233			421 bp upstream
Tssr133234	transcription start site region 133234			439 bp upstream
Tssr133235	transcription start site region 133235			472 bp upstream
Tssr133236	transcription start site region 133236			521 bp upstream
Tssr133237	transcription start site region 133237			543 bp upstream
Tssr133238	transcription start site region 133238			576 bp upstream
Tssr133239	transcription start site region 133239			618 bp upstream
Tssr133240	transcription start site region 133240			710 bp upstream
Tssr133241	transcription start site region 133241			727 bp upstream
Tssr133242	transcription start site region 133242			735 bp upstream
Tssr133243	transcription start site region 133243			761 bp upstream
Tssr133244	transcription start site region 133244			782 bp upstream
Tssr133245	transcription start site region 133245			826 bp upstream
Tssr133246	transcription start site region 133246			851 bp upstream
Tssr133247	transcription start site region 133247			939 bp upstream
Tssr133248	transcription start site region 133248			959 bp upstream
Tssr133249	transcription start site region 133249			1810 bp upstream
Tssr133250	transcription start site region 133250			1844 bp upstream
Tssr133251	transcription start site region 133251			1875 bp upstream
Tssr136545	transcription start site region 136545			375 bp downstream
Tssr136546	transcription start site region 136546			497 bp downstream
Tssr136547	transcription start site region 136547			573 bp downstream
Tssr136548	transcription start site region 136548			583 bp downstream
Tssr136549	transcription start site region 136549			617 bp downstream
Tssr136550	transcription start site region 136550			723 bp downstream
Tssr136551	transcription start site region 136551			799 bp downstream