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rs16819285 SNP Detail
Summary
  • ID
    rs16819285
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr15:101167737 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          CCAGG TCCAAAAGAG CTCAGTCCGA
M
GACCAGCCAC ACCCCAGTGG GCCGG                                      

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
BUB
C3H/HeJ
C57BL/6J
CAST/EiJ
MRL/MpJ
PERA
SM/J
SPRET/EiJ
ss24774807 Nr4a1_JC9945_6 ROCHEBIO RPAMM f SNP C C C C C C C C C C C C C A
SNP Consensus Information
SNP Consensus Type
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
BUB
C3H/HeJ
C57BL/6J
CAST/EiJ
MRL/MpJ
PERA
SM/J
SPRET/EiJ
rs16819285 SNP C C C C C C C C C C C C C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101167737 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Rr370021 regulatory region 370021 1896 bp downstream
Rr510002 regulatory region 510002 1284 bp distal
Tssr133218 transcription start site region 133218 1982 bp downstream
Tssr133219 transcription start site region 133219 1960 bp downstream
Tssr133220 transcription start site region 133220 1865 bp downstream
Tssr133221 transcription start site region 133221 1805 bp downstream
Tssr133222 transcription start site region 133222 440 bp downstream
Tssr133223 transcription start site region 133223 220 bp upstream
Tssr133224 transcription start site region 133224 263 bp upstream
Tssr133225 transcription start site region 133225 274 bp upstream
Tssr133226 transcription start site region 133226 295 bp upstream
Tssr133227 transcription start site region 133227 303 bp upstream
Tssr133228 transcription start site region 133228 321 bp upstream
Tssr133229 transcription start site region 133229 332 bp upstream
Tssr133230 transcription start site region 133230 410 bp upstream
Tssr133231 transcription start site region 133231 442 bp upstream
Tssr133232 transcription start site region 133232 461 bp upstream
Tssr133233 transcription start site region 133233 489 bp upstream
Tssr133234 transcription start site region 133234 507 bp upstream
Tssr133235 transcription start site region 133235 540 bp upstream
Tssr133236 transcription start site region 133236 589 bp upstream
Tssr133237 transcription start site region 133237 611 bp upstream
Tssr133238 transcription start site region 133238 644 bp upstream
Tssr133239 transcription start site region 133239 686 bp upstream
Tssr133240 transcription start site region 133240 778 bp upstream
Tssr133241 transcription start site region 133241 795 bp upstream
Tssr133242 transcription start site region 133242 803 bp upstream
Tssr133243 transcription start site region 133243 829 bp upstream
Tssr133244 transcription start site region 133244 850 bp upstream
Tssr133245 transcription start site region 133245 894 bp upstream
Tssr133246 transcription start site region 133246 919 bp upstream
Tssr133247 transcription start site region 133247 1007 bp upstream
Tssr133248 transcription start site region 133248 1027 bp upstream
Tssr133249 transcription start site region 133249 1878 bp upstream
Tssr133250 transcription start site region 133250 1912 bp upstream
Tssr133251 transcription start site region 133251 1943 bp upstream
Tssr136545 transcription start site region 136545 443 bp downstream
Tssr136546 transcription start site region 136546 565 bp downstream
Tssr136547 transcription start site region 136547 641 bp downstream
Tssr136548 transcription start site region 136548 651 bp downstream
Tssr136549 transcription start site region 136549 685 bp downstream
Tssr136550 transcription start site region 136550 791 bp downstream
Tssr136551 transcription start site region 136551 867 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory