rs16819286 SNP Detail

Summary

• ID
  rs16819286
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167713 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                              AGCAAGAAAC TTGGTAGGCC
  GGGGAGGGGG GTGGGGGGAG CCAGGTGGCA GGCCTAGACA AGGAAGCGGG TGTCAGGACC
  AAAGAACAGA AGACTCCCAA TCCCTCAGCC CAAATGCTAT CTCAACGAGT CACAAAGCTC
  ACAGGCAGAG ACCAGGTCCA AAAGAGCTCA GTCCGACGAC CAGCCACACC CCAGTGGGCC
  S
  GGGGAGCTAG GAAAGGCTGT CCAGCATGTC CCCCCAGGAA CAGGGGGAAG CTGTGTTCCT
  CCAACCCCCA GCCTCCCTGT TCACAGGTCA GGGCTGAGAG AGGCAACCCA CAGAGCTTCA
  GCCCACCCCT CTATCCCCCA GGAGATCTGC TGACTTTTCA ACCAGTCACT TCCTGGGAGT
  ACATTCCCAG GCACACCCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774808	Nr4a1_JC9945_7	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819286					SNP	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	C	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167713 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	1872 bp downstream
Rr510002	regulatory region 510002	1260 bp distal
Tssr133218	transcription start site region 133218	1958 bp downstream
Tssr133219	transcription start site region 133219	1936 bp downstream
Tssr133220	transcription start site region 133220	1841 bp downstream
Tssr133221	transcription start site region 133221	1781 bp downstream
Tssr133222	transcription start site region 133222	416 bp downstream
Tssr133223	transcription start site region 133223	244 bp upstream
Tssr133224	transcription start site region 133224	287 bp upstream
Tssr133225	transcription start site region 133225	298 bp upstream
Tssr133226	transcription start site region 133226	319 bp upstream
Tssr133227	transcription start site region 133227	327 bp upstream
Tssr133228	transcription start site region 133228	345 bp upstream
Tssr133229	transcription start site region 133229	356 bp upstream
Tssr133230	transcription start site region 133230	434 bp upstream
Tssr133231	transcription start site region 133231	466 bp upstream
Tssr133232	transcription start site region 133232	485 bp upstream
Tssr133233	transcription start site region 133233	513 bp upstream
Tssr133234	transcription start site region 133234	531 bp upstream
Tssr133235	transcription start site region 133235	564 bp upstream
Tssr133236	transcription start site region 133236	613 bp upstream
Tssr133237	transcription start site region 133237	635 bp upstream
Tssr133238	transcription start site region 133238	668 bp upstream
Tssr133239	transcription start site region 133239	710 bp upstream
Tssr133240	transcription start site region 133240	802 bp upstream
Tssr133241	transcription start site region 133241	819 bp upstream
Tssr133242	transcription start site region 133242	827 bp upstream
Tssr133243	transcription start site region 133243	853 bp upstream
Tssr133244	transcription start site region 133244	874 bp upstream
Tssr133245	transcription start site region 133245	918 bp upstream
Tssr133246	transcription start site region 133246	943 bp upstream
Tssr133247	transcription start site region 133247	1031 bp upstream
Tssr133248	transcription start site region 133248	1051 bp upstream
Tssr133249	transcription start site region 133249	1902 bp upstream
Tssr133250	transcription start site region 133250	1936 bp upstream
Tssr133251	transcription start site region 133251	1967 bp upstream
Tssr136545	transcription start site region 136545	467 bp downstream
Tssr136546	transcription start site region 136546	589 bp downstream
Tssr136547	transcription start site region 136547	665 bp downstream
Tssr136548	transcription start site region 136548	675 bp downstream
Tssr136549	transcription start site region 136549	709 bp downstream
Tssr136550	transcription start site region 136550	815 bp downstream
Tssr136551	transcription start site region 136551	891 bp downstream