rs16819288 SNP Detail

Summary

• ID
  rs16819288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101167592 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        GAGAG AGGCAACCCA CAGAGCTTCA
  R
  CCCACCCCTC TATCCCCCAG GAGAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774810	Nr4a1_JC9945_9	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LP/J	MRL/MpJ	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819288					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101167592 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr370021	regulatory region 370021	1751 bp downstream
Rr510002	regulatory region 510002	1139 bp distal
Tssr133218	transcription start site region 133218	1837 bp downstream
Tssr133219	transcription start site region 133219	1815 bp downstream
Tssr133220	transcription start site region 133220	1720 bp downstream
Tssr133221	transcription start site region 133221	1660 bp downstream
Tssr133222	transcription start site region 133222	295 bp downstream
Tssr133223	transcription start site region 133223	365 bp upstream
Tssr133224	transcription start site region 133224	408 bp upstream
Tssr133225	transcription start site region 133225	419 bp upstream
Tssr133226	transcription start site region 133226	440 bp upstream
Tssr133227	transcription start site region 133227	448 bp upstream
Tssr133228	transcription start site region 133228	466 bp upstream
Tssr133229	transcription start site region 133229	477 bp upstream
Tssr133230	transcription start site region 133230	555 bp upstream
Tssr133231	transcription start site region 133231	587 bp upstream
Tssr133232	transcription start site region 133232	606 bp upstream
Tssr133233	transcription start site region 133233	634 bp upstream
Tssr133234	transcription start site region 133234	652 bp upstream
Tssr133235	transcription start site region 133235	685 bp upstream
Tssr133236	transcription start site region 133236	734 bp upstream
Tssr133237	transcription start site region 133237	756 bp upstream
Tssr133238	transcription start site region 133238	789 bp upstream
Tssr133239	transcription start site region 133239	831 bp upstream
Tssr133240	transcription start site region 133240	923 bp upstream
Tssr133241	transcription start site region 133241	940 bp upstream
Tssr133242	transcription start site region 133242	948 bp upstream
Tssr133243	transcription start site region 133243	974 bp upstream
Tssr133244	transcription start site region 133244	995 bp upstream
Tssr133245	transcription start site region 133245	1039 bp upstream
Tssr133246	transcription start site region 133246	1064 bp upstream
Tssr133247	transcription start site region 133247	1152 bp upstream
Tssr133248	transcription start site region 133248	1172 bp upstream
Tssr136545	transcription start site region 136545	588 bp downstream
Tssr136546	transcription start site region 136546	710 bp downstream
Tssr136547	transcription start site region 136547	786 bp downstream
Tssr136548	transcription start site region 136548	796 bp downstream
Tssr136549	transcription start site region 136549	830 bp downstream
Tssr136550	transcription start site region 136550	936 bp downstream
Tssr136551	transcription start site region 136551	1012 bp downstream