CACAG AGCTTCAGCC CACCCCTCTA
Y
CCCCCAGGAG ATCTGCTGAC TTTTC
Y = C/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BUB |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB |
LP/J |
MRL/MpJ |
NZB/BlNJ |
NZW/Lac |
PERA |
SM/J |
SPRET/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss24774811 | Nr4a1_JC9945_10 | ROCHEBIO | RPAMM | f | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C |
| SNP Consensus Information | ||||||||||||||||||||||||
| SNP | Consensus Type | 129/Sv |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BUB |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB |
LP/J |
MRL/MpJ |
NZB/BlNJ |
NZW/Lac |
PERA |
SM/J |
SPRET/EiJ |
||||
| rs16819289 | SNP | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | T | C | ||||
| Location: Chr15:101167579 () rs orientation: reverse | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Nr4a1 | nuclear receptor subfamily 4, group A, member 1 | within coordinates | ||||||
| Rr370021 | regulatory region 370021 | 1738 bp downstream | ||||||
| Rr510002 | regulatory region 510002 | 1126 bp distal | ||||||
| Tssr133218 | transcription start site region 133218 | 1824 bp downstream | ||||||
| Tssr133219 | transcription start site region 133219 | 1802 bp downstream | ||||||
| Tssr133220 | transcription start site region 133220 | 1707 bp downstream | ||||||
| Tssr133221 | transcription start site region 133221 | 1647 bp downstream | ||||||
| Tssr133222 | transcription start site region 133222 | 282 bp downstream | ||||||
| Tssr133223 | transcription start site region 133223 | 378 bp upstream | ||||||
| Tssr133224 | transcription start site region 133224 | 421 bp upstream | ||||||
| Tssr133225 | transcription start site region 133225 | 432 bp upstream | ||||||
| Tssr133226 | transcription start site region 133226 | 453 bp upstream | ||||||
| Tssr133227 | transcription start site region 133227 | 461 bp upstream | ||||||
| Tssr133228 | transcription start site region 133228 | 479 bp upstream | ||||||
| Tssr133229 | transcription start site region 133229 | 490 bp upstream | ||||||
| Tssr133230 | transcription start site region 133230 | 568 bp upstream | ||||||
| Tssr133231 | transcription start site region 133231 | 600 bp upstream | ||||||
| Tssr133232 | transcription start site region 133232 | 619 bp upstream | ||||||
| Tssr133233 | transcription start site region 133233 | 647 bp upstream | ||||||
| Tssr133234 | transcription start site region 133234 | 665 bp upstream | ||||||
| Tssr133235 | transcription start site region 133235 | 698 bp upstream | ||||||
| Tssr133236 | transcription start site region 133236 | 747 bp upstream | ||||||
| Tssr133237 | transcription start site region 133237 | 769 bp upstream | ||||||
| Tssr133238 | transcription start site region 133238 | 802 bp upstream | ||||||
| Tssr133239 | transcription start site region 133239 | 844 bp upstream | ||||||
| Tssr133240 | transcription start site region 133240 | 936 bp upstream | ||||||
| Tssr133241 | transcription start site region 133241 | 953 bp upstream | ||||||
| Tssr133242 | transcription start site region 133242 | 961 bp upstream | ||||||
| Tssr133243 | transcription start site region 133243 | 987 bp upstream | ||||||
| Tssr133244 | transcription start site region 133244 | 1008 bp upstream | ||||||
| Tssr133245 | transcription start site region 133245 | 1052 bp upstream | ||||||
| Tssr133246 | transcription start site region 133246 | 1077 bp upstream | ||||||
| Tssr133247 | transcription start site region 133247 | 1165 bp upstream | ||||||
| Tssr133248 | transcription start site region 133248 | 1185 bp upstream | ||||||
| Tssr136545 | transcription start site region 136545 | 601 bp downstream | ||||||
| Tssr136546 | transcription start site region 136546 | 723 bp downstream | ||||||
| Tssr136547 | transcription start site region 136547 | 799 bp downstream | ||||||
| Tssr136548 | transcription start site region 136548 | 809 bp downstream | ||||||
| Tssr136549 | transcription start site region 136549 | 843 bp downstream | ||||||
| Tssr136550 | transcription start site region 136550 | 949 bp downstream | ||||||
| Tssr136551 | transcription start site region 136551 | 1025 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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