rs16819290 SNP Detail

Summary

• ID
  rs16819290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101168592 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        TGGCT GGTGGTGGGA ACAATTTCAG
  R
  GAACTCTGGG CCAGGCTGGG GCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774812	Nr4a1_JC9946_1	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819290					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101168592 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133222	transcription start site region 133222	1295 bp downstream
Tssr133223	transcription start site region 133223	605 bp downstream
Tssr133224	transcription start site region 133224	587 bp downstream
Tssr133225	transcription start site region 133225	571 bp downstream
Tssr133226	transcription start site region 133226	553 bp downstream
Tssr133227	transcription start site region 133227	540 bp downstream
Tssr133228	transcription start site region 133228	524 bp downstream
Tssr133229	transcription start site region 133229	486 bp downstream
Tssr133230	transcription start site region 133230	427 bp downstream
Tssr133231	transcription start site region 133231	401 bp downstream
Tssr133232	transcription start site region 133232	374 bp downstream
Tssr133233	transcription start site region 133233	353 bp downstream
Tssr133234	transcription start site region 133234	327 bp downstream
Tssr133235	transcription start site region 133235	285 bp downstream
Tssr133236	transcription start site region 133236	246 bp downstream
Tssr133237	transcription start site region 133237	215 bp downstream
Tssr133238	transcription start site region 133238	197 bp downstream
Tssr133239	transcription start site region 133239	134 bp downstream
Tssr133240	transcription start site region 133240	66 bp downstream
Tssr133241	transcription start site region 133241	57 bp downstream
Tssr133242	transcription start site region 133242	45 bp downstream
Tssr133243	transcription start site region 133243	24 bp downstream
Tssr133244	transcription start site region 133244	within coordinates
Tssr133245	transcription start site region 133245	39 bp upstream
Tssr133246	transcription start site region 133246	64 bp upstream
Tssr133247	transcription start site region 133247	152 bp upstream
Tssr133248	transcription start site region 133248	172 bp upstream
Tssr133249	transcription start site region 133249	1023 bp upstream
Tssr133250	transcription start site region 133250	1057 bp upstream
Tssr133251	transcription start site region 133251	1088 bp upstream
Tssr133252	transcription start site region 133252	1435 bp upstream
Tssr133253	transcription start site region 133253	1446 bp upstream
Tssr133254	transcription start site region 133254	1466 bp upstream
Tssr133255	transcription start site region 133255	1499 bp upstream
Tssr133256	transcription start site region 133256	1540 bp upstream
Tssr133257	transcription start site region 133257	1558 bp upstream
Tssr136545	transcription start site region 136545	401 bp upstream
Tssr136546	transcription start site region 136546	280 bp upstream
Tssr136547	transcription start site region 136547	205 bp upstream
Tssr136548	transcription start site region 136548	188 bp upstream
Tssr136549	transcription start site region 136549	163 bp upstream
Tssr136550	transcription start site region 136550	47 bp upstream
Tssr136551	transcription start site region 136551	12 bp downstream