rs16819291 SNP Detail

Summary

• ID
  rs16819291
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101168328 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        CGCTG GAGGATAGGG TCTCATCTAA
  Y
  GGGCCGCTCA GGGTGCCCGG GTAGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	SM/J	SPRET/EiJ
ss24774813	Nr4a1_JC9946_2	ROCHEBIO	RPAMM	f	SNP	T		T	T	T	T	T	T	C	T	T	C	T	T		T	C	T	C	C	T		C	T	C
ss63630905	NES17040898	PERLEGEN	MM_PANEL2	r	SNP		A		A			A			A		G			A							A
SNP Consensus Information
SNP					Consensus Type	129/Sv	129S1/SvImJ	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	FVB/NJ	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	NZW/LacJ	PERA	SM/J	SPRET/EiJ
rs16819291					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	C	C	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63630905	NES17040898	PERLEGEN	MM_PANEL	r	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101168328 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Rr510002	regulatory region 510002	1875 bp distal
Tssr133222	transcription start site region 133222	1031 bp downstream
Tssr133223	transcription start site region 133223	341 bp downstream
Tssr133224	transcription start site region 133224	323 bp downstream
Tssr133225	transcription start site region 133225	307 bp downstream
Tssr133226	transcription start site region 133226	289 bp downstream
Tssr133227	transcription start site region 133227	276 bp downstream
Tssr133228	transcription start site region 133228	260 bp downstream
Tssr133229	transcription start site region 133229	222 bp downstream
Tssr133230	transcription start site region 133230	163 bp downstream
Tssr133231	transcription start site region 133231	137 bp downstream
Tssr133232	transcription start site region 133232	110 bp downstream
Tssr133233	transcription start site region 133233	89 bp downstream
Tssr133234	transcription start site region 133234	63 bp downstream
Tssr133235	transcription start site region 133235	21 bp downstream
Tssr133236	transcription start site region 133236	within coordinates
Tssr133237	transcription start site region 133237	20 bp upstream
Tssr133238	transcription start site region 133238	53 bp upstream
Tssr133239	transcription start site region 133239	95 bp upstream
Tssr133240	transcription start site region 133240	187 bp upstream
Tssr133241	transcription start site region 133241	204 bp upstream
Tssr133242	transcription start site region 133242	212 bp upstream
Tssr133243	transcription start site region 133243	238 bp upstream
Tssr133244	transcription start site region 133244	259 bp upstream
Tssr133245	transcription start site region 133245	303 bp upstream
Tssr133246	transcription start site region 133246	328 bp upstream
Tssr133247	transcription start site region 133247	416 bp upstream
Tssr133248	transcription start site region 133248	436 bp upstream
Tssr133249	transcription start site region 133249	1287 bp upstream
Tssr133250	transcription start site region 133250	1321 bp upstream
Tssr133251	transcription start site region 133251	1352 bp upstream
Tssr133252	transcription start site region 133252	1699 bp upstream
Tssr133253	transcription start site region 133253	1710 bp upstream
Tssr133254	transcription start site region 133254	1730 bp upstream
Tssr133255	transcription start site region 133255	1763 bp upstream
Tssr133256	transcription start site region 133256	1804 bp upstream
Tssr133257	transcription start site region 133257	1822 bp upstream
Tssr136545	transcription start site region 136545	137 bp upstream
Tssr136546	transcription start site region 136546	16 bp upstream
Tssr136547	transcription start site region 136547	50 bp downstream
Tssr136548	transcription start site region 136548	60 bp downstream
Tssr136549	transcription start site region 136549	94 bp downstream
Tssr136550	transcription start site region 136550	200 bp downstream
Tssr136551	transcription start site region 136551	276 bp downstream