AACTTGAAGG ACGCCGAAGC GGGGGAGGTG GCCGAGGATG AGGAAGAAGA
Y
GTGGAGGAGG CAGAGGAACA AGCTGAGGAG CACGGCTGGG TCGTCCCCGG
Y = C/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | 129/Sv |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
BUB |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB |
LP/J |
MOLF |
MRL/MpJ |
MSM |
NZB/BlNJ |
NZW/Lac |
PERA |
SM/J |
SPRET/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss24774816 | Nr4a1_JC9946_5 | ROCHEBIO | RPAMM | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | T | C | C | C | C | C |
| SNP Consensus Information | |||||||||||||||||||||||||||
| SNP | Consensus Type | 129/Sv |
A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
BUB |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB |
LP/J |
MOLF |
MRL/MpJ |
MSM |
NZB/BlNJ |
NZW/Lac |
PERA |
SM/J |
SPRET/EiJ |
||||
| rs16819294 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | C | T | C | C | C | C | C | ||||
| Location: Chr15:101168229 () rs orientation: reverse | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Nr4a1 | nuclear receptor subfamily 4, group A, member 1 | within coordinates | ||||||
| Rr510002 | regulatory region 510002 | 1776 bp distal | ||||||
| Tssr133222 | transcription start site region 133222 | 932 bp downstream | ||||||
| Tssr133223 | transcription start site region 133223 | 242 bp downstream | ||||||
| Tssr133224 | transcription start site region 133224 | 224 bp downstream | ||||||
| Tssr133225 | transcription start site region 133225 | 208 bp downstream | ||||||
| Tssr133226 | transcription start site region 133226 | 190 bp downstream | ||||||
| Tssr133227 | transcription start site region 133227 | 177 bp downstream | ||||||
| Tssr133228 | transcription start site region 133228 | 161 bp downstream | ||||||
| Tssr133229 | transcription start site region 133229 | 123 bp downstream | ||||||
| Tssr133230 | transcription start site region 133230 | 64 bp downstream | ||||||
| Tssr133231 | transcription start site region 133231 | 38 bp downstream | ||||||
| Tssr133232 | transcription start site region 133232 | 11 bp downstream | ||||||
| Tssr133233 | transcription start site region 133233 | within coordinates | ||||||
| Tssr133234 | transcription start site region 133234 | 15 bp upstream | ||||||
| Tssr133235 | transcription start site region 133235 | 48 bp upstream | ||||||
| Tssr133236 | transcription start site region 133236 | 97 bp upstream | ||||||
| Tssr133237 | transcription start site region 133237 | 119 bp upstream | ||||||
| Tssr133238 | transcription start site region 133238 | 152 bp upstream | ||||||
| Tssr133239 | transcription start site region 133239 | 194 bp upstream | ||||||
| Tssr133240 | transcription start site region 133240 | 286 bp upstream | ||||||
| Tssr133241 | transcription start site region 133241 | 303 bp upstream | ||||||
| Tssr133242 | transcription start site region 133242 | 311 bp upstream | ||||||
| Tssr133243 | transcription start site region 133243 | 337 bp upstream | ||||||
| Tssr133244 | transcription start site region 133244 | 358 bp upstream | ||||||
| Tssr133245 | transcription start site region 133245 | 402 bp upstream | ||||||
| Tssr133246 | transcription start site region 133246 | 427 bp upstream | ||||||
| Tssr133247 | transcription start site region 133247 | 515 bp upstream | ||||||
| Tssr133248 | transcription start site region 133248 | 535 bp upstream | ||||||
| Tssr133249 | transcription start site region 133249 | 1386 bp upstream | ||||||
| Tssr133250 | transcription start site region 133250 | 1420 bp upstream | ||||||
| Tssr133251 | transcription start site region 133251 | 1451 bp upstream | ||||||
| Tssr133252 | transcription start site region 133252 | 1798 bp upstream | ||||||
| Tssr133253 | transcription start site region 133253 | 1809 bp upstream | ||||||
| Tssr133254 | transcription start site region 133254 | 1829 bp upstream | ||||||
| Tssr133255 | transcription start site region 133255 | 1862 bp upstream | ||||||
| Tssr133256 | transcription start site region 133256 | 1903 bp upstream | ||||||
| Tssr133257 | transcription start site region 133257 | 1921 bp upstream | ||||||
| Tssr136545 | transcription start site region 136545 | 38 bp upstream | ||||||
| Tssr136546 | transcription start site region 136546 | 73 bp downstream | ||||||
| Tssr136547 | transcription start site region 136547 | 149 bp downstream | ||||||
| Tssr136548 | transcription start site region 136548 | 159 bp downstream | ||||||
| Tssr136549 | transcription start site region 136549 | 193 bp downstream | ||||||
| Tssr136550 | transcription start site region 136550 | 299 bp downstream | ||||||
| Tssr136551 | transcription start site region 136551 | 375 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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