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rs16819295 SNP Detail
Summary
  • ID
    rs16819295
  • Variation Type
    SNP
  • Alleles
    A/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101169904 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                                GGCATCTGGA GGCTGCTTGG
GTTTTGAAGG TAGCCGGCCC CGCCGCCCTT TTAGGCTGTC TGTCCGTACA ACTGCAGAGA
GACGGGCAGT ATTGAGAAAG GAGACCTGGA GAAGGAGGGT CTTCAGGGCA CACTATACAC
CCCACTTCTG AGAAGTCAGA GACAGAGAAC TCAGACCATG ATGGGGACCC CACAAGGCCC
W
CCTCACCCCA CCCTTTCCAG AAAGCAGGTG GAAGCTACAC CTGCATTTAG GGGCTGGAAT
CTAGAAGTGG GAGTGGGAAT TAGGTGCAGA TCCTGGTGAG CCCGGCTGTC CCACCCCATC
AGGTCGCCTA TGCCGAGGGC ACCATCTTGC CACCCACCTT CCTTCACCAT GCCCACAGCC
AGGCACTTCT GGAAGCGGCA                                            

W = A/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
CAST/EiJ
DBA/2J
LG/J
LP/J
MOLF
MRL/MpJ
MSM
NZB/BlNJ
NZW/Lac
PERA
SM/J
SPRET/EiJ
ss24774817 Nr4a1_JC9947_1 ROCHEBIO RPAMM f SNP T T T T T T T T T T T T T T T T T T T A
SNP Consensus Information
SNP Consensus Type
129/Sv
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
CAST/EiJ
DBA/2J
LG/J
LP/J
MOLF
MRL/MpJ
MSM
NZB/BlNJ
NZW/Lac
PERA
SM/J
SPRET/EiJ
rs16819295 SNP T T T T T T T T T T T T T T T T T T T A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101169904 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Tssr133223 transcription start site region 133223 1917 bp downstream
Tssr133224 transcription start site region 133224 1899 bp downstream
Tssr133225 transcription start site region 133225 1883 bp downstream
Tssr133226 transcription start site region 133226 1865 bp downstream
Tssr133227 transcription start site region 133227 1852 bp downstream
Tssr133228 transcription start site region 133228 1836 bp downstream
Tssr133229 transcription start site region 133229 1798 bp downstream
Tssr133230 transcription start site region 133230 1739 bp downstream
Tssr133231 transcription start site region 133231 1713 bp downstream
Tssr133232 transcription start site region 133232 1686 bp downstream
Tssr133233 transcription start site region 133233 1665 bp downstream
Tssr133234 transcription start site region 133234 1639 bp downstream
Tssr133235 transcription start site region 133235 1597 bp downstream
Tssr133236 transcription start site region 133236 1558 bp downstream
Tssr133237 transcription start site region 133237 1527 bp downstream
Tssr133238 transcription start site region 133238 1509 bp downstream
Tssr133239 transcription start site region 133239 1446 bp downstream
Tssr133240 transcription start site region 133240 1378 bp downstream
Tssr133241 transcription start site region 133241 1369 bp downstream
Tssr133242 transcription start site region 133242 1357 bp downstream
Tssr133243 transcription start site region 133243 1336 bp downstream
Tssr133244 transcription start site region 133244 1306 bp downstream
Tssr133245 transcription start site region 133245 1260 bp downstream
Tssr133246 transcription start site region 133246 1230 bp downstream
Tssr133247 transcription start site region 133247 1149 bp downstream
Tssr133248 transcription start site region 133248 1131 bp downstream
Tssr133249 transcription start site region 133249 274 bp downstream
Tssr133250 transcription start site region 133250 244 bp downstream
Tssr133251 transcription start site region 133251 210 bp downstream
Tssr133252 transcription start site region 133252 123 bp upstream
Tssr133253 transcription start site region 133253 134 bp upstream
Tssr133254 transcription start site region 133254 154 bp upstream
Tssr133255 transcription start site region 133255 187 bp upstream
Tssr133256 transcription start site region 133256 228 bp upstream
Tssr133257 transcription start site region 133257 246 bp upstream
Tssr133258 transcription start site region 133258 698 bp upstream
Tssr133259 transcription start site region 133259 715 bp upstream
Tssr133260 transcription start site region 133260 733 bp upstream
Tssr133261 transcription start site region 133261 743 bp upstream
Tssr133262 transcription start site region 133262 754 bp upstream
Tssr133263 transcription start site region 133263 775 bp upstream
Tssr133264 transcription start site region 133264 794 bp upstream
Tssr133265 transcription start site region 133265 1003 bp upstream
Tssr133266 transcription start site region 133266 1028 bp upstream
Tssr133267 transcription start site region 133267 1069 bp upstream
Tssr133268 transcription start site region 133268 1116 bp upstream
Tssr133269 transcription start site region 133269 1288 bp upstream
Tssr133270 transcription start site region 133270 1950 bp upstream
Tssr133271 transcription start site region 133271 1999 bp upstream
Tssr136545 transcription start site region 136545 1713 bp upstream
Tssr136546 transcription start site region 136546 1592 bp upstream
Tssr136547 transcription start site region 136547 1517 bp upstream
Tssr136548 transcription start site region 136548 1500 bp upstream
Tssr136549 transcription start site region 136549 1475 bp upstream
Tssr136550 transcription start site region 136550 1359 bp upstream
Tssr136551 transcription start site region 136551 1254 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory