rs16819296 SNP Detail

Summary

• ID
  rs16819296
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101169894 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

    TTGAGAAA GGAGACCTGA GAAGGAGGGT TTTCNGGGCA CACTATACAC CCCACTTCTG
  AGAAGTCAGA GACAGAGAAC TCAGACCATG ATGGGGACCC CACAAGGCCC NCCTCACCCC
  R
  CCCTTTCCAG AAAGCAGGTG GAAGCTACAC CTGCATNTAG GGGCTGGAAT CTAGAAGTGG
  GAGTGGGAAT TAGGTGCAGA TCCTGGTGAG CCCGGCTGTC NCACCCCATC AGGTNGCCTA
  TGCCGAGGGC ACCATCTTGC CACCCACCTT CCTTCACCAT GCCCACAGCC AGGCACTTCT
  GGAAGCGGCA GAACTGGCAG CGGTTCCGCC GCCTNTTGTC CACAGGGCAA TCCTTGTTTG
  CCAGGCAGAT GTACTTGGCG CTTTTNTGTA CTGTGCGCTG GAGGAAGGGG GGACACGGAA
  CAGGCTGTCA GAGCATGGGG TTTGGGGGGG GGGTGGAGAG CCCAGGGGAG GGGACCGTCC
  AGATCCTGTG GCCGACGCAG ACAAAAGCGC CCTCTGTTCA TAGCTATTTT CCTAACATTN
  GGATGTAGGG GAGGGAGAAA CGNNGGNCCN                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774818	Nr4a1_JC9947_2	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819296					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101169894 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133223	transcription start site region 133223	1907 bp downstream
Tssr133224	transcription start site region 133224	1889 bp downstream
Tssr133225	transcription start site region 133225	1873 bp downstream
Tssr133226	transcription start site region 133226	1855 bp downstream
Tssr133227	transcription start site region 133227	1842 bp downstream
Tssr133228	transcription start site region 133228	1826 bp downstream
Tssr133229	transcription start site region 133229	1788 bp downstream
Tssr133230	transcription start site region 133230	1729 bp downstream
Tssr133231	transcription start site region 133231	1703 bp downstream
Tssr133232	transcription start site region 133232	1676 bp downstream
Tssr133233	transcription start site region 133233	1655 bp downstream
Tssr133234	transcription start site region 133234	1629 bp downstream
Tssr133235	transcription start site region 133235	1587 bp downstream
Tssr133236	transcription start site region 133236	1548 bp downstream
Tssr133237	transcription start site region 133237	1517 bp downstream
Tssr133238	transcription start site region 133238	1499 bp downstream
Tssr133239	transcription start site region 133239	1436 bp downstream
Tssr133240	transcription start site region 133240	1368 bp downstream
Tssr133241	transcription start site region 133241	1359 bp downstream
Tssr133242	transcription start site region 133242	1347 bp downstream
Tssr133243	transcription start site region 133243	1326 bp downstream
Tssr133244	transcription start site region 133244	1296 bp downstream
Tssr133245	transcription start site region 133245	1250 bp downstream
Tssr133246	transcription start site region 133246	1220 bp downstream
Tssr133247	transcription start site region 133247	1139 bp downstream
Tssr133248	transcription start site region 133248	1121 bp downstream
Tssr133249	transcription start site region 133249	264 bp downstream
Tssr133250	transcription start site region 133250	234 bp downstream
Tssr133251	transcription start site region 133251	200 bp downstream
Tssr133252	transcription start site region 133252	133 bp upstream
Tssr133253	transcription start site region 133253	144 bp upstream
Tssr133254	transcription start site region 133254	164 bp upstream
Tssr133255	transcription start site region 133255	197 bp upstream
Tssr133256	transcription start site region 133256	238 bp upstream
Tssr133257	transcription start site region 133257	256 bp upstream
Tssr133258	transcription start site region 133258	708 bp upstream
Tssr133259	transcription start site region 133259	725 bp upstream
Tssr133260	transcription start site region 133260	743 bp upstream
Tssr133261	transcription start site region 133261	753 bp upstream
Tssr133262	transcription start site region 133262	764 bp upstream
Tssr133263	transcription start site region 133263	785 bp upstream
Tssr133264	transcription start site region 133264	804 bp upstream
Tssr133265	transcription start site region 133265	1013 bp upstream
Tssr133266	transcription start site region 133266	1038 bp upstream
Tssr133267	transcription start site region 133267	1079 bp upstream
Tssr133268	transcription start site region 133268	1126 bp upstream
Tssr133269	transcription start site region 133269	1298 bp upstream
Tssr133270	transcription start site region 133270	1960 bp upstream
Tssr136545	transcription start site region 136545	1703 bp upstream
Tssr136546	transcription start site region 136546	1582 bp upstream
Tssr136547	transcription start site region 136547	1507 bp upstream
Tssr136548	transcription start site region 136548	1490 bp upstream
Tssr136549	transcription start site region 136549	1465 bp upstream
Tssr136550	transcription start site region 136550	1349 bp upstream
Tssr136551	transcription start site region 136551	1244 bp upstream