rs16819297 SNP Detail

Summary

• ID
  rs16819297
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:101169857 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AAGCA GGTGGAAGCT ACACCTGCAT
  Y
  TAGGGGCTGG AATCTAGAAG TGGGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24774819	Nr4a1_JC9947_3	ROCHEBIO	RPAMM	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129/Sv	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16819297					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101169857 () rs orientation: reverse

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nr4a1	nuclear receptor subfamily 4, group A, member 1			Intron
				Noncoding-Transcript-Variant
Tssr133223	transcription start site region 133223			1870 bp downstream
Tssr133224	transcription start site region 133224			1852 bp downstream
Tssr133225	transcription start site region 133225			1836 bp downstream
Tssr133226	transcription start site region 133226			1818 bp downstream
Tssr133227	transcription start site region 133227			1805 bp downstream
Tssr133228	transcription start site region 133228			1789 bp downstream
Tssr133229	transcription start site region 133229			1751 bp downstream
Tssr133230	transcription start site region 133230			1692 bp downstream
Tssr133231	transcription start site region 133231			1666 bp downstream
Tssr133232	transcription start site region 133232			1639 bp downstream
Tssr133233	transcription start site region 133233			1618 bp downstream
Tssr133234	transcription start site region 133234			1592 bp downstream
Tssr133235	transcription start site region 133235			1550 bp downstream
Tssr133236	transcription start site region 133236			1511 bp downstream
Tssr133237	transcription start site region 133237			1480 bp downstream
Tssr133238	transcription start site region 133238			1462 bp downstream
Tssr133239	transcription start site region 133239			1399 bp downstream
Tssr133240	transcription start site region 133240			1331 bp downstream
Tssr133241	transcription start site region 133241			1322 bp downstream
Tssr133242	transcription start site region 133242			1310 bp downstream
Tssr133243	transcription start site region 133243			1289 bp downstream
Tssr133244	transcription start site region 133244			1259 bp downstream
Tssr133245	transcription start site region 133245			1213 bp downstream
Tssr133246	transcription start site region 133246			1183 bp downstream
Tssr133247	transcription start site region 133247			1102 bp downstream
Tssr133248	transcription start site region 133248			1084 bp downstream
Tssr133249	transcription start site region 133249			227 bp downstream
Tssr133250	transcription start site region 133250			197 bp downstream
Tssr133251	transcription start site region 133251			163 bp downstream
Tssr133252	transcription start site region 133252			170 bp upstream
Tssr133253	transcription start site region 133253			181 bp upstream
Tssr133254	transcription start site region 133254			201 bp upstream
Tssr133255	transcription start site region 133255			234 bp upstream
Tssr133256	transcription start site region 133256			275 bp upstream
Tssr133257	transcription start site region 133257			293 bp upstream
Tssr133258	transcription start site region 133258			745 bp upstream
Tssr133259	transcription start site region 133259			762 bp upstream
Tssr133260	transcription start site region 133260			780 bp upstream
Tssr133261	transcription start site region 133261			790 bp upstream
Tssr133262	transcription start site region 133262			801 bp upstream
Tssr133263	transcription start site region 133263			822 bp upstream
Tssr133264	transcription start site region 133264			841 bp upstream
Tssr133265	transcription start site region 133265			1050 bp upstream
Tssr133266	transcription start site region 133266			1075 bp upstream
Tssr133267	transcription start site region 133267			1116 bp upstream
Tssr133268	transcription start site region 133268			1163 bp upstream
Tssr133269	transcription start site region 133269			1335 bp upstream
Tssr133270	transcription start site region 133270			1997 bp upstream
Tssr136545	transcription start site region 136545			1666 bp upstream
Tssr136546	transcription start site region 136546			1545 bp upstream
Tssr136547	transcription start site region 136547			1470 bp upstream
Tssr136548	transcription start site region 136548			1453 bp upstream
Tssr136549	transcription start site region 136549			1428 bp upstream
Tssr136550	transcription start site region 136550			1312 bp upstream
Tssr136551	transcription start site region 136551			1207 bp upstream