rs16819299 SNP Detail

Summary

• ID
  rs16819299
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101169779 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

         TTG AGAAAGGAGA CCTGAGAAGG AGGGTTTTCN GGGCACACTA TACACCCCAC
  TTCTGAGAAG TCAGAGACAG AGAACTCAGA CCATGATGGG GACCCCACAA GGCCCNCCTC
  ACCCCNCCCT TTCCAGAAAG CAGGTGGAAG CTACACCTGC ATNTAGGGGC TGGAATCTAG
  AAGTGGGAGT GGGAATTAGG TGCAGATCCT GGTGAGCCCG GCTGTCNCAC CCCATCAGGT
  Y
  GCCTATGCCG AGGGCACCAT CTTGCCACCC ACCTTCCTTC ACCATGCCCA CAGCCAGGCA
  CTTCTGGAAG CGGCAGAACT GGCAGCGGTT CCGCCGCCTN TTGTCCACAG GGCAATCCTT
  GTTTGCCAGG CAGATGTACT TGGCGCTTTT NTGTACTGTG CGCTGGAGGA AGGGGGGACA
  CGGAACAGGC TGTCAGAGCA TGGGGTTTGG GGGGGGGGTG GAGAGCCCAG GGGAGGGGAC
  CGTCCAGATC CTGTGGCCGA CGCAGACAAA AGCGCCCTCT GTTCATAGCT ATTTTCCTAA
  CATTNGGATG TAGGGGAGGG AGAAACGNNG GNCCN                           
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	DBA/2J	LG/J	MSM	PERA	SM/J	SPRET/EiJ
ss24774821	Nr4a1_JC9947_5	ROCHEBIO	RPAMM	f	SNP	C	C	C	T	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	DBA/2J	LG/J	MSM	PERA	SM/J	SPRET/EiJ
rs16819299					SNP	C	C	C	T	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101169779 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133223	transcription start site region 133223	1792 bp downstream
Tssr133224	transcription start site region 133224	1774 bp downstream
Tssr133225	transcription start site region 133225	1758 bp downstream
Tssr133226	transcription start site region 133226	1740 bp downstream
Tssr133227	transcription start site region 133227	1727 bp downstream
Tssr133228	transcription start site region 133228	1711 bp downstream
Tssr133229	transcription start site region 133229	1673 bp downstream
Tssr133230	transcription start site region 133230	1614 bp downstream
Tssr133231	transcription start site region 133231	1588 bp downstream
Tssr133232	transcription start site region 133232	1561 bp downstream
Tssr133233	transcription start site region 133233	1540 bp downstream
Tssr133234	transcription start site region 133234	1514 bp downstream
Tssr133235	transcription start site region 133235	1472 bp downstream
Tssr133236	transcription start site region 133236	1433 bp downstream
Tssr133237	transcription start site region 133237	1402 bp downstream
Tssr133238	transcription start site region 133238	1384 bp downstream
Tssr133239	transcription start site region 133239	1321 bp downstream
Tssr133240	transcription start site region 133240	1253 bp downstream
Tssr133241	transcription start site region 133241	1244 bp downstream
Tssr133242	transcription start site region 133242	1232 bp downstream
Tssr133243	transcription start site region 133243	1211 bp downstream
Tssr133244	transcription start site region 133244	1181 bp downstream
Tssr133245	transcription start site region 133245	1135 bp downstream
Tssr133246	transcription start site region 133246	1105 bp downstream
Tssr133247	transcription start site region 133247	1024 bp downstream
Tssr133248	transcription start site region 133248	1006 bp downstream
Tssr133249	transcription start site region 133249	149 bp downstream
Tssr133250	transcription start site region 133250	119 bp downstream
Tssr133251	transcription start site region 133251	85 bp downstream
Tssr133252	transcription start site region 133252	248 bp upstream
Tssr133253	transcription start site region 133253	259 bp upstream
Tssr133254	transcription start site region 133254	279 bp upstream
Tssr133255	transcription start site region 133255	312 bp upstream
Tssr133256	transcription start site region 133256	353 bp upstream
Tssr133257	transcription start site region 133257	371 bp upstream
Tssr133258	transcription start site region 133258	823 bp upstream
Tssr133259	transcription start site region 133259	840 bp upstream
Tssr133260	transcription start site region 133260	858 bp upstream
Tssr133261	transcription start site region 133261	868 bp upstream
Tssr133262	transcription start site region 133262	879 bp upstream
Tssr133263	transcription start site region 133263	900 bp upstream
Tssr133264	transcription start site region 133264	919 bp upstream
Tssr133265	transcription start site region 133265	1128 bp upstream
Tssr133266	transcription start site region 133266	1153 bp upstream
Tssr133267	transcription start site region 133267	1194 bp upstream
Tssr133268	transcription start site region 133268	1241 bp upstream
Tssr133269	transcription start site region 133269	1413 bp upstream
Tssr136545	transcription start site region 136545	1588 bp upstream
Tssr136546	transcription start site region 136546	1467 bp upstream
Tssr136547	transcription start site region 136547	1392 bp upstream
Tssr136548	transcription start site region 136548	1375 bp upstream
Tssr136549	transcription start site region 136549	1350 bp upstream
Tssr136550	transcription start site region 136550	1234 bp upstream
Tssr136551	transcription start site region 136551	1129 bp upstream