rs16819300 SNP Detail

Summary

• ID
  rs16819300
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  123
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:101169628 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                         TTGA GAAAGGAGAC CTGAGAAGGA
  GGGTTTTCNG GGCACACTAT ACACCCCACT TCTGAGAAGT CAGAGACAGA GAACTCAGAC
  CATGATGGGG ACCCCACAAG GCCCNCCTCA CCCCNCCCTT TCCAGAAAGC AGGTGGAAGC
  TACACCTGCA TNTAGGGGCT GGAATCTAGA AGTGGGAGTG GGAATTAGGT GCAGATCCTG
  GTGAGCCCGG CTGTCNCACC CCATCAGGTN GCCTATGCCG AGGGCACCAT CTTGCCACCC
  ACCTTCCTTC ACCATGCCCA CAGCCAGGCA CTTCTGGAAG CGGCAGAACT GGCAGCGGTT
  CCGCCGCCTN TTGTCCACAG GGCAATCCTT GTTTGCCAGG CAGATGTACT TGGCGCTTTT
  Y
  TGTACTGTGC GCTGGAGGAA GGGGGGACAC GGAACAGGCT GTCAGAGCAT GGGGTTTGGG
  GGGGGGGTGG AGAGCCCAGG GGAGGGGACC GTCCAGATCC TGTGGCCGAC GCAGACAAAA
  GCGCCCTCTG TTCATAGCTA TTTTCCTAAC ATTNGGATGT AGGGGAGGGA GAAACGNNGG
  NCCN                                                             
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	LG/J	LP/J	MOLF	MSM	PERA	SM/J	SPRET/EiJ
ss24774822	Nr4a1_JC9947_6	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	C3H/HeJ	LG/J	LP/J	MOLF	MSM	PERA	SM/J	SPRET/EiJ
rs16819300					SNP	C	C	C	C	T	C	C	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:101169628 () rs orientation: reverse

Symbol	Name	Function Class
Nr4a1	nuclear receptor subfamily 4, group A, member 1	within coordinates
Tssr133223	transcription start site region 133223	1641 bp downstream
Tssr133224	transcription start site region 133224	1623 bp downstream
Tssr133225	transcription start site region 133225	1607 bp downstream
Tssr133226	transcription start site region 133226	1589 bp downstream
Tssr133227	transcription start site region 133227	1576 bp downstream
Tssr133228	transcription start site region 133228	1560 bp downstream
Tssr133229	transcription start site region 133229	1522 bp downstream
Tssr133230	transcription start site region 133230	1463 bp downstream
Tssr133231	transcription start site region 133231	1437 bp downstream
Tssr133232	transcription start site region 133232	1410 bp downstream
Tssr133233	transcription start site region 133233	1389 bp downstream
Tssr133234	transcription start site region 133234	1363 bp downstream
Tssr133235	transcription start site region 133235	1321 bp downstream
Tssr133236	transcription start site region 133236	1282 bp downstream
Tssr133237	transcription start site region 133237	1251 bp downstream
Tssr133238	transcription start site region 133238	1233 bp downstream
Tssr133239	transcription start site region 133239	1170 bp downstream
Tssr133240	transcription start site region 133240	1102 bp downstream
Tssr133241	transcription start site region 133241	1093 bp downstream
Tssr133242	transcription start site region 133242	1081 bp downstream
Tssr133243	transcription start site region 133243	1060 bp downstream
Tssr133244	transcription start site region 133244	1030 bp downstream
Tssr133245	transcription start site region 133245	984 bp downstream
Tssr133246	transcription start site region 133246	954 bp downstream
Tssr133247	transcription start site region 133247	873 bp downstream
Tssr133248	transcription start site region 133248	855 bp downstream
Tssr133249	transcription start site region 133249	within coordinates
Tssr133250	transcription start site region 133250	21 bp upstream
Tssr133251	transcription start site region 133251	52 bp upstream
Tssr133252	transcription start site region 133252	399 bp upstream
Tssr133253	transcription start site region 133253	410 bp upstream
Tssr133254	transcription start site region 133254	430 bp upstream
Tssr133255	transcription start site region 133255	463 bp upstream
Tssr133256	transcription start site region 133256	504 bp upstream
Tssr133257	transcription start site region 133257	522 bp upstream
Tssr133258	transcription start site region 133258	974 bp upstream
Tssr133259	transcription start site region 133259	991 bp upstream
Tssr133260	transcription start site region 133260	1009 bp upstream
Tssr133261	transcription start site region 133261	1019 bp upstream
Tssr133262	transcription start site region 133262	1030 bp upstream
Tssr133263	transcription start site region 133263	1051 bp upstream
Tssr133264	transcription start site region 133264	1070 bp upstream
Tssr133265	transcription start site region 133265	1279 bp upstream
Tssr133266	transcription start site region 133266	1304 bp upstream
Tssr133267	transcription start site region 133267	1345 bp upstream
Tssr133268	transcription start site region 133268	1392 bp upstream
Tssr133269	transcription start site region 133269	1564 bp upstream
Tssr136545	transcription start site region 136545	1437 bp upstream
Tssr136546	transcription start site region 136546	1316 bp upstream
Tssr136547	transcription start site region 136547	1241 bp upstream
Tssr136548	transcription start site region 136548	1224 bp upstream
Tssr136549	transcription start site region 136549	1199 bp upstream
Tssr136550	transcription start site region 136550	1083 bp upstream
Tssr136551	transcription start site region 136551	978 bp upstream