CAATT CCCACAGGAA AACAGGGCTA
Y
GGCAGCTGTT TGTAACTGGC TCCCC
Y = C/T
Note: Sequence in lower case indicates low-complexity or repetitive sequence |
| Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB |
LG/J |
MOLF |
MRL/MpJ |
NZB/BlNJ |
NZW/Lac |
PERA |
SPRET/EiJ |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ss24774824 | Nr4a1_JC9948_2 | ROCHEBIO | RPAMM | f | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T |
| SNP Consensus Information | |||||||||||||||||||||||
| SNP | Consensus Type | A/HeJ |
A/J |
AKR/J |
B10.D2-Hc<0> H2 |
BALB/cByJ |
BALB/cJ |
C3H/HeJ |
C57BL/6J |
CAST/EiJ |
DBA/2J |
FVB |
LG/J |
MOLF |
MRL/MpJ |
NZB/BlNJ |
NZW/Lac |
PERA |
SPRET/EiJ |
||||
| rs16819302 | SNP | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | C | T | ||||
| Location: Chr15:101170365 () rs orientation: reverse | ||||||||
| Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
|---|---|---|---|---|---|---|---|---|
| Nr4a1 | nuclear receptor subfamily 4, group A, member 1 | within coordinates | ||||||
| Tssr133237 | transcription start site region 133237 | 1988 bp downstream | ||||||
| Tssr133238 | transcription start site region 133238 | 1970 bp downstream | ||||||
| Tssr133239 | transcription start site region 133239 | 1907 bp downstream | ||||||
| Tssr133240 | transcription start site region 133240 | 1839 bp downstream | ||||||
| Tssr133241 | transcription start site region 133241 | 1830 bp downstream | ||||||
| Tssr133242 | transcription start site region 133242 | 1818 bp downstream | ||||||
| Tssr133243 | transcription start site region 133243 | 1797 bp downstream | ||||||
| Tssr133244 | transcription start site region 133244 | 1767 bp downstream | ||||||
| Tssr133245 | transcription start site region 133245 | 1721 bp downstream | ||||||
| Tssr133246 | transcription start site region 133246 | 1691 bp downstream | ||||||
| Tssr133247 | transcription start site region 133247 | 1610 bp downstream | ||||||
| Tssr133248 | transcription start site region 133248 | 1592 bp downstream | ||||||
| Tssr133249 | transcription start site region 133249 | 735 bp downstream | ||||||
| Tssr133250 | transcription start site region 133250 | 705 bp downstream | ||||||
| Tssr133251 | transcription start site region 133251 | 671 bp downstream | ||||||
| Tssr133252 | transcription start site region 133252 | 328 bp downstream | ||||||
| Tssr133253 | transcription start site region 133253 | 318 bp downstream | ||||||
| Tssr133254 | transcription start site region 133254 | 282 bp downstream | ||||||
| Tssr133255 | transcription start site region 133255 | 250 bp downstream | ||||||
| Tssr133256 | transcription start site region 133256 | 220 bp downstream | ||||||
| Tssr133257 | transcription start site region 133257 | 207 bp downstream | ||||||
| Tssr133258 | transcription start site region 133258 | 237 bp upstream | ||||||
| Tssr133259 | transcription start site region 133259 | 254 bp upstream | ||||||
| Tssr133260 | transcription start site region 133260 | 272 bp upstream | ||||||
| Tssr133261 | transcription start site region 133261 | 282 bp upstream | ||||||
| Tssr133262 | transcription start site region 133262 | 293 bp upstream | ||||||
| Tssr133263 | transcription start site region 133263 | 314 bp upstream | ||||||
| Tssr133264 | transcription start site region 133264 | 333 bp upstream | ||||||
| Tssr133265 | transcription start site region 133265 | 542 bp upstream | ||||||
| Tssr133266 | transcription start site region 133266 | 567 bp upstream | ||||||
| Tssr133267 | transcription start site region 133267 | 608 bp upstream | ||||||
| Tssr133268 | transcription start site region 133268 | 655 bp upstream | ||||||
| Tssr133269 | transcription start site region 133269 | 827 bp upstream | ||||||
| Tssr133270 | transcription start site region 133270 | 1489 bp upstream | ||||||
| Tssr133271 | transcription start site region 133271 | 1538 bp upstream | ||||||
| Tssr133272 | transcription start site region 133272 | 1598 bp upstream | ||||||
| Tssr133273 | transcription start site region 133273 | 1637 bp upstream | ||||||
| Tssr133274 | transcription start site region 133274 | 1704 bp upstream | ||||||
| Tssr133275 | transcription start site region 133275 | 1954 bp upstream | ||||||
| Tssr136547 | transcription start site region 136547 | 1978 bp upstream | ||||||
| Tssr136548 | transcription start site region 136548 | 1961 bp upstream | ||||||
| Tssr136549 | transcription start site region 136549 | 1936 bp upstream | ||||||
| Tssr136550 | transcription start site region 136550 | 1820 bp upstream | ||||||
| Tssr136551 | transcription start site region 136551 | 1715 bp upstream | ||||||
| Tssr136552 | transcription start site region 136552 | 1887 bp downstream | ||||||
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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