About   Help   FAQ
rs16819303 SNP Detail
Summary
  • ID
    rs16819303
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr15:101170230 (GRCm39)
  • SNP Orientation to the Genome
    reverse
  • SNP Reference Flanking Sequence
                                          CCTTT CCTAACAGGC ACAAAGGCAT
Y
GCATATGTTC TCAGGGCAGG GCAGA                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129/Sv
129S1/SvImJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB
FVB/NJ
LG/J
MOLF
MRL/MpJ
MSM
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PERA
SPRET/EiJ
ss24774825 Nr4a1_JC9948_3 ROCHEBIO RPAMM f SNP T T T T T T T T T C T T T T T T T T C T
ss63630899 NES17040903 PERLEGEN MM_PANEL2 r SNP A A A G A A A
SNP Consensus Information
SNP Consensus Type
129/Sv
129S1/SvImJ
A/HeJ
A/J
AKR/J
B10.D2-Hc<0> H2 H2-T18/oSnJ
BALB/cByJ
BALB/cJ
C3H/HeJ
C57BL/6J
CAST/EiJ
DBA/2J
FVB
FVB/NJ
LG/J
MOLF
MRL/MpJ
MSM
NOD/ShiLtJ
NZB/BlNJ
NZW/Lac
NZW/LacJ
PERA
SPRET/EiJ
rs16819303 SNP T T T T T T T T T T C T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss63630899 NES17040903 PERLEGEN MM_PANEL r SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr15:101170230 () rs orientation: reverse
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Nr4a1 nuclear receptor subfamily 4, group A, member 1 within coordinates
Tssr133233 transcription start site region 133233 1991 bp downstream
Tssr133234 transcription start site region 133234 1965 bp downstream
Tssr133235 transcription start site region 133235 1923 bp downstream
Tssr133236 transcription start site region 133236 1884 bp downstream
Tssr133237 transcription start site region 133237 1853 bp downstream
Tssr133238 transcription start site region 133238 1835 bp downstream
Tssr133239 transcription start site region 133239 1772 bp downstream
Tssr133240 transcription start site region 133240 1704 bp downstream
Tssr133241 transcription start site region 133241 1695 bp downstream
Tssr133242 transcription start site region 133242 1683 bp downstream
Tssr133243 transcription start site region 133243 1662 bp downstream
Tssr133244 transcription start site region 133244 1632 bp downstream
Tssr133245 transcription start site region 133245 1586 bp downstream
Tssr133246 transcription start site region 133246 1556 bp downstream
Tssr133247 transcription start site region 133247 1475 bp downstream
Tssr133248 transcription start site region 133248 1457 bp downstream
Tssr133249 transcription start site region 133249 600 bp downstream
Tssr133250 transcription start site region 133250 570 bp downstream
Tssr133251 transcription start site region 133251 536 bp downstream
Tssr133252 transcription start site region 133252 193 bp downstream
Tssr133253 transcription start site region 133253 183 bp downstream
Tssr133254 transcription start site region 133254 147 bp downstream
Tssr133255 transcription start site region 133255 115 bp downstream
Tssr133256 transcription start site region 133256 85 bp downstream
Tssr133257 transcription start site region 133257 72 bp downstream
Tssr133258 transcription start site region 133258 372 bp upstream
Tssr133259 transcription start site region 133259 389 bp upstream
Tssr133260 transcription start site region 133260 407 bp upstream
Tssr133261 transcription start site region 133261 417 bp upstream
Tssr133262 transcription start site region 133262 428 bp upstream
Tssr133263 transcription start site region 133263 449 bp upstream
Tssr133264 transcription start site region 133264 468 bp upstream
Tssr133265 transcription start site region 133265 677 bp upstream
Tssr133266 transcription start site region 133266 702 bp upstream
Tssr133267 transcription start site region 133267 743 bp upstream
Tssr133268 transcription start site region 133268 790 bp upstream
Tssr133269 transcription start site region 133269 962 bp upstream
Tssr133270 transcription start site region 133270 1624 bp upstream
Tssr133271 transcription start site region 133271 1673 bp upstream
Tssr133272 transcription start site region 133272 1733 bp upstream
Tssr133273 transcription start site region 133273 1772 bp upstream
Tssr133274 transcription start site region 133274 1839 bp upstream
Tssr136546 transcription start site region 136546 1918 bp upstream
Tssr136547 transcription start site region 136547 1843 bp upstream
Tssr136548 transcription start site region 136548 1826 bp upstream
Tssr136549 transcription start site region 136549 1801 bp upstream
Tssr136550 transcription start site region 136550 1685 bp upstream
Tssr136551 transcription start site region 136551 1580 bp upstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources
Funding Information
Warranty Disclaimer, Privacy Notice, Licensing, & Copyright
Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory