rs16822038 SNP Detail

Summary

• ID
  rs16822038
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012060 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGGGGT TGAGAGAGAG
  AGGTTGAGAG AGGGGAGCTG AAGCTTTCTC TTAATAGTAA ATTAATTATA GGGACCTCTC
  TAGTGTTAGC GAGATGAAGC CCCTCTCCAA ATTCAAGTCA ATTGCCATAT TCTACAGTTC
  TCCTTTCAGA GCTGCAAGAA CCCGAGACCT TGGGACTATC CTAGCTAGCA GTGGCAGAAT
  R
  TATTTTTAGG CTCAATTCGT ATCCCATCAA TAGCCAGTGA CTTCAGATAC TCAGGCGACA
  AAGATAATCA CCACTGTCCT TCTCTGCCTT CCCCACAGAC TCTAAATCCT CTACCACCAC
  CTCTAACTCA TTCAGTCTTC ACAACCAAGA GGGCCCAGAC TCTACCTCCT GCCTCAATCT
  TATTTACTAA TGTAAAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777817	Nr1h3_JC9759_1	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822038					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012060 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	404 bp proximal
Gm74571	predicted gene, 74571	474 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr397125	regulatory region 397125	1384 bp upstream
Rr560660	regulatory region 560660	107 bp proximal
Rr560661	regulatory region 560661	485 bp proximal
Rr560662	regulatory region 560662	940 bp proximal
Rr560663	regulatory region 560663	1123 bp proximal
Rr560664	regulatory region 560664	1182 bp proximal
Tssr18868	transcription start site region 18868	468 bp upstream
Tssr25161	transcription start site region 25161	1153 bp downstream
Tssr25162	transcription start site region 25162	1226 bp downstream
Tssr25163	transcription start site region 25163	1302 bp downstream