rs16822040 SNP Detail

Summary

• ID
  rs16822040
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGCTTT CTCTTAATAG
  TAAATTAATT ATAGGGACCT CTCTAGTGTT AGCGAGATGA AGCCCCTCTC CAAATTCAAG
  TCAATTGCCA TATTCTACAG TTCTCCTTTC AGAGCTGCAA GAACCCGAGA CCTTGGGACT
  ATCCTAGCTA GCAGTGGCAG AATGTATTTT TAGGCTCAAT TCGTATCCCA TCAATAGCCA
  S
  TGACTTCAGA TACTCAGGCG ACAAAGATAA TCACCACTGT CCTTCTCTGC CTTCCCCACA
  GACTCTAAAT CCTCTACCAC CACCTCTAAC TCATTCAGTC TTCACAACCA AGAGGGCCCA
  GACTCTACCT CCTGCCTCAA TCTTATTTAC TAATGTAAAG CCCCGAGCTC TTGTCCCATC
  GTAGTCCAAA TCTCTAAATG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777819	Nr1h3_JC9759_3	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822040					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	367 bp proximal
Gm74571	predicted gene, 74571	437 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr397125	regulatory region 397125	1347 bp upstream
Rr560660	regulatory region 560660	70 bp proximal
Rr560661	regulatory region 560661	448 bp proximal
Rr560662	regulatory region 560662	903 bp proximal
Rr560663	regulatory region 560663	1086 bp proximal
Rr560664	regulatory region 560664	1145 bp proximal
Tssr18868	transcription start site region 18868	431 bp upstream
Tssr25161	transcription start site region 25161	1116 bp downstream
Tssr25162	transcription start site region 25162	1189 bp downstream
Tssr25163	transcription start site region 25163	1265 bp downstream