rs16822041 SNP Detail

Summary

• ID
  rs16822041
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012110 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATAGTAA ATTAATTATA
  GGGACCTCTC TAGTGTTAGC GAGATGAAGC CCCTCTCCAA ATTCAAGTCA ATTGCCATAT
  TCTACAGTTC TCCTTTCAGA GCTGCAAGAA CCCGAGACCT TGGGACTATC CTAGCTAGCA
  GTGGCAGAAT GTATTTTTAG GCTCAATTCG TATCCCATCA ATAGCCAGTG ACTTCAGATA
  Y
  TCAGGCGACA AAGATAATCA CCACTGTCCT TCTCTGCCTT CCCCACAGAC TCTAAATCCT
  CTACCACCAC CTCTAACTCA TTCAGTCTTC ACAACCAAGA GGGCCCAGAC TCTACCTCCT
  GCCTCAATCT TATTTACTAA TGTAAAGCCC CGAGCTCTTG TCCCATCGTA GTCCAAATCT
  CTAAATGCAC ACCTTTCTGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777820	Nr1h3_JC9759_4	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822041					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012110 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	354 bp proximal
Gm74571	predicted gene, 74571	424 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr397125	regulatory region 397125	1334 bp upstream
Rr560660	regulatory region 560660	57 bp proximal
Rr560661	regulatory region 560661	435 bp proximal
Rr560662	regulatory region 560662	890 bp proximal
Rr560663	regulatory region 560663	1073 bp proximal
Rr560664	regulatory region 560664	1132 bp proximal
Tssr18868	transcription start site region 18868	418 bp upstream
Tssr25161	transcription start site region 25161	1103 bp downstream
Tssr25162	transcription start site region 25162	1176 bp downstream
Tssr25163	transcription start site region 25163	1252 bp downstream