rs16822045 SNP Detail

Summary

• ID
  rs16822045
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012275 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCGTATCC CATCAATAGC
  CAGTGACTTC AGATACTCAG GCGACAAAGA TAATCACCAC TGTCCTTCTC TGCCTTCCCC
  ACAGACTCTA AATCCTCTAC CACCACCTCT AACTCATTCA GTCTTCACAA CCAAGAGGGC
  CCAGACTCTA CCTCCTGCCT CAATCTTATT TACTAATGTA AAGCCCCGAG CTCTTGTCCC
  R
  TCGTAGTCCA AATCTCTAAA TGCACACCTT TCTGCTATAA TCCTACATCA CCACTCACGT
  CTAGAGACCA CGGACTTTTA GGTAATCTCT GCATTTTCAG CCTACAATGG CCATACTACC
  AACCCTGTGG ATTCCGCCCC TCATTTGGGG CAGGATCTCA TAGTAAAAAC CACAAGAACC
  CGACCCAAGG ACGGTATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777824	Nr1h3_JC9759_8	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822045					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012275 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	189 bp proximal
Gm74571	predicted gene, 74571	259 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Rr367225	regulatory region 367225	1958 bp upstream
Rr397125	regulatory region 397125	1169 bp upstream
Rr560660	regulatory region 560660	within coordinates
Rr560661	regulatory region 560661	270 bp proximal
Rr560662	regulatory region 560662	725 bp proximal
Rr560663	regulatory region 560663	908 bp proximal
Rr560664	regulatory region 560664	967 bp proximal
Rr560665	regulatory region 560665	1878 bp proximal
Tssr18868	transcription start site region 18868	253 bp upstream
Tssr25161	transcription start site region 25161	938 bp downstream
Tssr25162	transcription start site region 25162	1011 bp downstream
Tssr25163	transcription start site region 25163	1087 bp downstream
Tssr25164	transcription start site region 25164	1893 bp downstream
Tssr25165	transcription start site region 25165	1911 bp downstream