rs16822047 SNP Detail

Summary

• ID
  rs16822047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCTGCCTC AATCTTATTT
  ACTAATGTAA AGCCCCGAGC TCTTGTCCCA TCGTAGTCCA AATCTCTAAA TGCACACCTT
  TCTGCTATAA TCCTACATCA CCACTCACGT CTAGAGACCA CGGACTTTTA GGTAATCTCT
  GCATTTTCAG CCTACAATGG CCATACTACC AACCCTGTGG ATTCCGCCCC TCATTTGGGG
  Y
  AGGATCTCAT AGTAAAAACC ACAAGAACCC GACCCAAGGA CGGTATGACA TCTTTGCTGA
  CGTGAGCACA ACCGGAGGCT TCCTCTCCTT CCTCCTCCTC CCCAGACAGT GACCTTGCAA
  GCTCATCAGC AGACTGGTCC AGCATGGGGG AAGAACTGGA GCAATGAAGC CAGCGATGGT
  CAGGACTGGG GAAGGAGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777826	Nr1h3_JC9759_10	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822047					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	38 bp proximal
Gm74571	predicted gene, 74571	108 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1980 bp downstream
Rr367225	regulatory region 367225	1807 bp upstream
Rr397125	regulatory region 397125	1018 bp upstream
Rr560660	regulatory region 560660	within coordinates
Rr560661	regulatory region 560661	119 bp proximal
Rr560662	regulatory region 560662	574 bp proximal
Rr560663	regulatory region 560663	757 bp proximal
Rr560664	regulatory region 560664	816 bp proximal
Rr560665	regulatory region 560665	1727 bp proximal
Tssr18868	transcription start site region 18868	102 bp upstream
Tssr25161	transcription start site region 25161	787 bp downstream
Tssr25162	transcription start site region 25162	860 bp downstream
Tssr25163	transcription start site region 25163	936 bp downstream
Tssr25164	transcription start site region 25164	1742 bp downstream
Tssr25165	transcription start site region 25165	1760 bp downstream
Tssr25166	transcription start site region 25166	1873 bp downstream
Tssr25167	transcription start site region 25167	1896 bp downstream