rs16822048 SNP Detail

Summary

• ID
  rs16822048
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91012456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCCCGAGC TCTTGTCCCA
  TCGTAGTCCA AATCTCTAAA TGCACACCTT TCTGCTATAA TCCTACATCA CCACTCACGT
  CTAGAGACCA CGGACTTTTA GGTAATCTCT GCATTTTCAG CCTACAATGG CCATACTACC
  AACCCTGTGG ATTCCGCCCC TCATTTGGGG CAGGATCTCA TAGTAAAAAC CACAAGAACC
  Y
  GACCCAAGGA CGGTATGACA TCTTTGCTGA CGTGAGCACA ACCGGAGGCT TCCTCTCCTT
  CCTCCTCCTC CCCAGACAGT GACCTTGCAA GCTCATCAGC AGACTGGTCC AGCATGGGGG
  AAGAACTGGA GCAATGAAGC CAGCGATGGT CAGGACTGGG GAAGGAGGAG TGAGCACGAA
  ACACTAAGCT GCGGGAGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777827	Nr1h3_JC9759_11	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822048					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91012456 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	8 bp proximal
Gm74571	predicted gene, 74571	78 bp upstream
Madd	MAP-kinase activating death domain	within coordinates
Nr1h3	nuclear receptor subfamily 1, group H, member 3	1950 bp downstream
Rr367225	regulatory region 367225	1777 bp upstream
Rr397125	regulatory region 397125	988 bp upstream
Rr560660	regulatory region 560660	within coordinates
Rr560661	regulatory region 560661	89 bp proximal
Rr560662	regulatory region 560662	544 bp proximal
Rr560663	regulatory region 560663	727 bp proximal
Rr560664	regulatory region 560664	786 bp proximal
Rr560665	regulatory region 560665	1697 bp proximal
Tssr18868	transcription start site region 18868	72 bp upstream
Tssr25161	transcription start site region 25161	757 bp downstream
Tssr25162	transcription start site region 25162	830 bp downstream
Tssr25163	transcription start site region 25163	906 bp downstream
Tssr25164	transcription start site region 25164	1712 bp downstream
Tssr25165	transcription start site region 25165	1730 bp downstream
Tssr25166	transcription start site region 25166	1843 bp downstream
Tssr25167	transcription start site region 25167	1866 bp downstream