rs16822050 SNP Detail

Summary

• ID
  rs16822050
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGGGGACG GGATGGGAAG
  CACCGGGCCA GCCCAGTCCA GGTAGGTGTC AAGGGGAGGA CTCACAGGAA CGCATTTTGT
  TTTGGTTGCT CAGATAGCTT TTAATTCGAC TTGGTTATAG AGTCCTTCTT GATGAAAATG
  GTGATCAATA TGAAAGTGCT TGTCAAGATA AACTGCCCCT AAGACTTTCT GACAGTTTAG
  M
  CTAACCTCCC ATGGCTCCCC CTGCACGCTG TTTGGATGTG CCCAGCCGCC CAGGCAGGAA
  GGCCAACTTG TCTGTCGGTG GAACCTACCA AGTCGGAATG GCGGGGGGCA CTTCAGGCCT
  CAGCTGCCAG GGTATTACCT ACACCAAGGT AGGGGAAACC GAGAACGGTG CCGCGATGCC
  CTCTGGGAAA TGGAGTCCAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777829	Nr1h3_JC9761_1	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822050					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	A	C	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013584 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	within coordinates
Gm74571	predicted gene, 74571	777 bp downstream
Madd	MAP-kinase activating death domain	180 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	822 bp downstream
Rr367225	regulatory region 367225	649 bp upstream
Rr397125	regulatory region 397125	within coordinates
Tssr18868	transcription start site region 18868	1027 bp downstream
Tssr25161	transcription start site region 25161	306 bp upstream
Tssr25162	transcription start site region 25162	287 bp upstream
Tssr25163	transcription start site region 25163	179 bp upstream
Tssr25164	transcription start site region 25164	584 bp downstream
Tssr25165	transcription start site region 25165	602 bp downstream
Tssr25166	transcription start site region 25166	715 bp downstream
Tssr25167	transcription start site region 25167	738 bp downstream