rs16822051 SNP Detail

Summary

• ID
  rs16822051
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGGGAAG CACCGGGCCA
  GCCCAGTCCA GGTAGGTGTC AAGGGGAGGA CTCACAGGAA CGCATTTTGT TTTGGTTGCT
  CAGATAGCTT TTAATTCGAC TTGGTTATAG AGTCCTTCTT GATGAAAATG GTGATCAATA
  TGAAAGTGCT TGTCAAGATA AACTGCCCCT AAGACTTTCT GACAGTTTAG CCTAACCTCC
  Y
  ATGGCTCCCC CTGCACGCTG TTTGGATGTG CCCAGCCGCC CAGGCAGGAA GGCCAACTTG
  TCTGTCGGTG GAACCTACCA AGTCGGAATG GCGGGGGGCA CTTCAGGCCT CAGCTGCCAG
  GGTATTACCT ACACCAAGGT AGGGGAAACC GAGAACGGTG CCGCGATGCC CTCTGGGAAA
  TGGAGTCCAG TCCTTTTGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777830	Nr1h3_JC9761_2	ROCHEBIO	RPAMM	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822051					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	within coordinates
Gm74571	predicted gene, 74571	787 bp downstream
Madd	MAP-kinase activating death domain	190 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	812 bp downstream
Rr367225	regulatory region 367225	639 bp upstream
Rr397125	regulatory region 397125	within coordinates
Rr560660	regulatory region 560660	1050 bp distal
Rr560661	regulatory region 560661	412 bp distal
Rr560662	regulatory region 560662	573 bp distal
Rr560663	regulatory region 560663	within coordinates
Rr560664	regulatory region 560664	331 bp distal
Rr560665	regulatory region 560665	559 bp proximal
Tssr18868	transcription start site region 18868	1037 bp downstream
Tssr25161	transcription start site region 25161	316 bp upstream
Tssr25162	transcription start site region 25162	297 bp upstream
Tssr25163	transcription start site region 25163	189 bp upstream
Tssr25164	transcription start site region 25164	574 bp downstream
Tssr25165	transcription start site region 25165	592 bp downstream
Tssr25166	transcription start site region 25166	705 bp downstream
Tssr25167	transcription start site region 25167	728 bp downstream