rs16822053 SNP Detail

Summary

• ID
  rs16822053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91013830 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGCCCAGGC AGGAAGGCCA
  ACTTGTCTGT CGGTGGAACC TACCAAGTCG GAATGGCGGG GGGCACTTCA GGCCTCAGCT
  GCCAGGGTAT TACCTACACC AAGGTAGGGG AAACCGAGAA CGGTGCCGCG ATGCCCTCTG
  GGAAATGGAG TCCAGTCCTT TTGACAACTC AAACATTTGT CATCCTCCAC TGGCCCTACC
  R
  GGACTTTTCT TCCAGTCCCA TAGGGCCCAG AGCCCAAAAG GAAGTACCCG ACCCTGGGTC
  TTTAAATCTG TACTCTTTTT CAGATGCCAA TGGAAAAAGT AAGACACTTT ACACACACAC
  ACACACACAC ACACACACAC CACACACACA CACACACACA CACACACACA CACACACACA
  CACACACACA CACGTGAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777832	Nr1h3_JC9761_4	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822053					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91013830 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	61 bp distal
Gm74571	predicted gene, 74571	1023 bp downstream
Madd	MAP-kinase activating death domain	426 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	576 bp downstream
Rr367225	regulatory region 367225	403 bp upstream
Rr397125	regulatory region 397125	85 bp downstream
Rr560660	regulatory region 560660	1286 bp distal
Rr560661	regulatory region 560661	648 bp distal
Rr560662	regulatory region 560662	809 bp distal
Rr560663	regulatory region 560663	within coordinates
Rr560664	regulatory region 560664	567 bp distal
Rr560665	regulatory region 560665	323 bp proximal
Tssr18868	transcription start site region 18868	1273 bp downstream
Tssr25161	transcription start site region 25161	552 bp upstream
Tssr25162	transcription start site region 25162	533 bp upstream
Tssr25163	transcription start site region 25163	425 bp upstream
Tssr25164	transcription start site region 25164	338 bp downstream
Tssr25165	transcription start site region 25165	356 bp downstream
Tssr25166	transcription start site region 25166	469 bp downstream
Tssr25167	transcription start site region 25167	492 bp downstream