rs16822055 SNP Detail

Summary

• ID
  rs16822055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91014237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTTCTT GCTGAAGATC
  CAACTCCTCC CCCCACAGGA AGAGCACCTG CTCCTACCTG GATCATTAAA GGGAAGGAGC
  ACCTAAGCCG CTGGCCCAGT GAACAGGAGC TGTCGCTTGT GATTCGCCCC TCTCCTCTGA
  GTCTGGAGGC AGATCCTAAC AGACACAGGC TTGCTCTGAC AGGGCGGCAG CCCCACTCTC
  R
  ATCCGGAAAT TTGCTTCCCT GGTTCTATAT TCATCTTGGC CTTCCTGTTT CAAGTGCCAC
  ATCTATTGGT GAGGCAGCCC TGAGGCACTC TCTAGCCAAG CCACAAAGCG ATAGTGGAGA
  ATTTCTTTGG GGCTCAGTGA GGAAAAACAG GAAGTGGTAG AGGCAGGATG GGCGGGGCCC
  TGAAGAACCC TGCACAAAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777834	Nr1h3_JC9762_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G
ss320391933	CHEV_2_91024049	CHEVERUD	SCREENING_POP	f	SNP													A								G
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822055					SNP	G	G	G	G	G	G	A	G	G	A	G	G	A	G	G	G	G	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91014237 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	468 bp distal
Gm74571	predicted gene, 74571	1430 bp downstream
Madd	MAP-kinase activating death domain	833 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	169 bp downstream
Rr367225	regulatory region 367225	within coordinates
Rr397125	regulatory region 397125	492 bp downstream
Rr560660	regulatory region 560660	1693 bp distal
Rr560661	regulatory region 560661	1055 bp distal
Rr560662	regulatory region 560662	1216 bp distal
Rr560663	regulatory region 560663	355 bp distal
Rr560664	regulatory region 560664	974 bp distal
Rr560665	regulatory region 560665	within coordinates
Tssr18868	transcription start site region 18868	1680 bp downstream
Tssr25161	transcription start site region 25161	959 bp upstream
Tssr25162	transcription start site region 25162	940 bp upstream
Tssr25163	transcription start site region 25163	832 bp upstream
Tssr25164	transcription start site region 25164	52 bp upstream
Tssr25165	transcription start site region 25165	within coordinates
Tssr25166	transcription start site region 25166	62 bp downstream
Tssr25167	transcription start site region 25167	85 bp downstream