rs16822056 SNP Detail

Summary

• ID
  rs16822056
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91014493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCACATCTA TTGGTGAGGC
  AGCCCTGAGG CACTCTCTAG CCAAGCCACA AAGCGATAGT GGAGAATTTC TTTGGGGCTC
  AGTGAGGAAA AACAGGAAGT GGTAGAGGCA GGATGGGCGG GGCCCTGAAG AACCCTGCAC
  AAAGTGGCTC TCCTGGCTAG TTTATTTGGT TGGGTCAACA AGGTCTTCAG ATGGTATACA
  R
  CGTTAGTAGA TCCCAACTGC CCAGCAGCCA GAAAACACCC AACCTGTTGA CTCTCCCTTA
  ATGCTACGCA AGGCTCTCTC CTTCACCCAG CTCCCAGGAA TGTCTGCCCT TCTCAGTCTG
  CTCCACCCGT GGGAAGCAGT CAGTGAGCCT TCGCCATGTG GCCAACACAA AGGACACGGT
  GAAACAGTCA CTCGTGGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777835	Nr1h3_JC9762_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822056					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	G	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91014493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	724 bp distal
Gm74571	predicted gene, 74571	1686 bp downstream
Madd	MAP-kinase activating death domain	1089 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367225	regulatory region 367225	within coordinates
Rr397125	regulatory region 397125	748 bp downstream
Rr560660	regulatory region 560660	1949 bp distal
Rr560661	regulatory region 560661	1311 bp distal
Rr560662	regulatory region 560662	1472 bp distal
Rr560663	regulatory region 560663	611 bp distal
Rr560664	regulatory region 560664	1230 bp distal
Rr560665	regulatory region 560665	within coordinates
Tssr18868	transcription start site region 18868	1936 bp downstream
Tssr25161	transcription start site region 25161	1215 bp upstream
Tssr25162	transcription start site region 25162	1196 bp upstream
Tssr25163	transcription start site region 25163	1088 bp upstream
Tssr25164	transcription start site region 25164	308 bp upstream
Tssr25165	transcription start site region 25165	249 bp upstream
Tssr25166	transcription start site region 25166	187 bp upstream
Tssr25167	transcription start site region 25167	125 bp upstream