rs16822059 SNP Detail

Summary

• ID
  rs16822059
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91014673 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATGT GGCCAACACA AAGGACACGG
  B
  GAAACAGTCA CTCGTGGACA TCCCA                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	LP/J	MOLF	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777838	Nr1h3_JC9763_1	ROCHEBIO	RPAMM	f	SNP	C		T	C	T		C	C	C	G	T	T	C	C
ss45258246	mCV22765913	ABI	CRAMUS_MOUSE	f	SNP		C				T	C
ss146923565	ENSMUSSNP1840997	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320391934	CHEV_2_91024485	CHEVERUD	SCREENING_POP	f	SNP								C					C
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BUB	C3H/HeJ	C57BL/6J	DBA/2J	LG/J	LP/J	MOLF	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822059					SNP	C	C	T	C	T	T	C	C	C	G	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91014673 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	904 bp distal
Gm74571	predicted gene, 74571	1866 bp downstream
Madd	MAP-kinase activating death domain	1269 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367225	regulatory region 367225	139 bp downstream
Rr397125	regulatory region 397125	928 bp downstream
Rr560661	regulatory region 560661	1491 bp distal
Rr560662	regulatory region 560662	1652 bp distal
Rr560663	regulatory region 560663	791 bp distal
Rr560664	regulatory region 560664	1410 bp distal
Rr560665	regulatory region 560665	20 bp distal
Tssr25161	transcription start site region 25161	1395 bp upstream
Tssr25162	transcription start site region 25162	1376 bp upstream
Tssr25163	transcription start site region 25163	1268 bp upstream
Tssr25164	transcription start site region 25164	488 bp upstream
Tssr25165	transcription start site region 25165	429 bp upstream
Tssr25166	transcription start site region 25166	367 bp upstream
Tssr25167	transcription start site region 25167	305 bp upstream