rs16822060 SNP Detail

Summary

• ID
  rs16822060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91014717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCAGAA AACACCCAAC
  CTGTTGACTC TCCCTTAATG CTACGCAAGG CTCTCTCCTT CACCCAGCTC CCAGGAATGT
  CTGCCCTTCT CAGTCTGCTC CACCCGTGGG AAGCAGTCAG TGAGCCTTCG CCATGTGGCC
  AACACAAAGG ACACGGTGAA ACAGTCACTC GTGGACATCC CAGATCTCAG ACAGCAGAGG
  R
  GGAAGCTTTT TGTCCTGCAG GCGAAGGGCA AACACTTGCT CTGAATGGAC GCTGCTCAAA
  GTACGGAGGC TCACCAGCTT CATTAGCATC CGTGGGAACA TCAGTGGGTC CTGGGGGTGT
  GGGGGAAGTC TAGTTGTTGT TCTTCCACAG AAAAGGTGAG ACAGAGCAGG GGGATTGTTA
  GAAACACAGG AATTAGCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777839	Nr1h3_JC9763_2	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822060					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91014717 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	948 bp distal
Gm74571	predicted gene, 74571	1910 bp downstream
Madd	MAP-kinase activating death domain	1313 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367225	regulatory region 367225	183 bp downstream
Rr397125	regulatory region 397125	972 bp downstream
Rr560661	regulatory region 560661	1535 bp distal
Rr560662	regulatory region 560662	1696 bp distal
Rr560663	regulatory region 560663	835 bp distal
Rr560664	regulatory region 560664	1454 bp distal
Rr560665	regulatory region 560665	64 bp distal
Tssr25161	transcription start site region 25161	1439 bp upstream
Tssr25162	transcription start site region 25162	1420 bp upstream
Tssr25163	transcription start site region 25163	1312 bp upstream
Tssr25164	transcription start site region 25164	532 bp upstream
Tssr25165	transcription start site region 25165	473 bp upstream
Tssr25166	transcription start site region 25166	411 bp upstream
Tssr25167	transcription start site region 25167	349 bp upstream