rs16822061 SNP Detail

Summary

• ID
  rs16822061
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91014762 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCTCCACCC GTGGGAAGCA GTCAGTGAGC
  CTTCGCCATG TGGCCAACAC AAAGGACACG GTGAAACAGT CACTCGTGGA CATCCCAGAT
  CTCAGACAGC AGAGGGGGAA GCTTTTTGTC CTGCAGGCGA AGGGCAAACA CTTGCTCTGA
  R
  TGGACGCTGC TCAAAGTACG GAGGCTCACC AGCTTCATTA GCATCCGTGG GAACATCAGT
  GGGTCCTGGG GGTGTGGGGG AAGTCTAGTT GTTGTTCTTC CACAGAAAAG GTGAGACAGA
  GCAGGGGGAT TGTTAGAAAC ACAGGAATTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777840	Nr1h3_JC9763_3	ROCHEBIO	RPAMM	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A
ss320391935	CHEV_2_91024574	CHEVERUD	SCREENING_POP	f	SNP													G								A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822061					SNP	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91014762 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	993 bp distal
Gm74571	predicted gene, 74571	1955 bp downstream
Madd	MAP-kinase activating death domain	1358 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367225	regulatory region 367225	228 bp downstream
Rr397125	regulatory region 397125	1017 bp downstream
Rr560661	regulatory region 560661	1580 bp distal
Rr560662	regulatory region 560662	1741 bp distal
Rr560663	regulatory region 560663	880 bp distal
Rr560664	regulatory region 560664	1499 bp distal
Rr560665	regulatory region 560665	109 bp distal
Tssr25161	transcription start site region 25161	1484 bp upstream
Tssr25162	transcription start site region 25162	1465 bp upstream
Tssr25163	transcription start site region 25163	1357 bp upstream
Tssr25164	transcription start site region 25164	577 bp upstream
Tssr25165	transcription start site region 25165	518 bp upstream
Tssr25166	transcription start site region 25166	456 bp upstream
Tssr25167	transcription start site region 25167	394 bp upstream