rs16822064 SNP Detail

Summary

• ID
  rs16822064
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91014836 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCCTTC GCCATGTGGC
  CAACACAAAG GACACGGTGA AACAGTCACT CGTGGACATC CCAGATCTCA GACAGCAGAG
  GGGGAAGCTT TTTGTCCTGC AGGCGAAGGG CAAACACTTG CTCTGAATGG ACGCTGCTCA
  AAGTACGGAG GCTCACCAGC TTCATTAGCA TCCGTGGGAA CATCAGTGGG TCCTGGGGGT
  R
  TGGGGGAAGT CTAGTTGTTG TTCTTCCACA GAAAAGGTGA GACAGAGCAG GGGGATTGTT
  AGAAACACAG GAATTAGCAT GCTAGGTGGA GGTAAAACTC TTGAAAGAAA GTGGGTATCA
  GAAAATGGGC TGAAGAGCAG AAGAGAAGGA CACGGAGACT CACGTGGGGG TGGTTGATGG
  AGACGTAGGC GTGCAGGGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777843	Nr1h3_JC9763_6	ROCHEBIO	RPAMM	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cByJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822064					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91014836 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1067 bp distal
Madd	MAP-kinase activating death domain	1432 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367225	regulatory region 367225	302 bp downstream
Rr397125	regulatory region 397125	1091 bp downstream
Rr560661	regulatory region 560661	1654 bp distal
Rr560662	regulatory region 560662	1815 bp distal
Rr560663	regulatory region 560663	954 bp distal
Rr560664	regulatory region 560664	1573 bp distal
Rr560665	regulatory region 560665	183 bp distal
Tssr25161	transcription start site region 25161	1558 bp upstream
Tssr25162	transcription start site region 25162	1539 bp upstream
Tssr25163	transcription start site region 25163	1431 bp upstream
Tssr25164	transcription start site region 25164	651 bp upstream
Tssr25165	transcription start site region 25165	592 bp upstream
Tssr25166	transcription start site region 25166	530 bp upstream
Tssr25167	transcription start site region 25167	468 bp upstream