rs16822072 SNP Detail

Summary

• ID
  rs16822072
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  123
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91015210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATC CACTGTAGGG ACTATAGCCA
  W
  CCTGGGCGAA ACCCTCCTGG GCAAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
ss24777851	Nr1h3_JC9763_14	ROCHEBIO	RPAMM	f	SNP	A		T	T	A	T	T	T	T	A	T	T	A	T	T	T	A	T	T	A	T
ss146923567	ENSMUSSNP2153353	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
ss320391937	CHEV_2_91025022	CHEVERUD	SCREENING_POP	f	SNP												T								A
SNP Consensus Information
SNP					Consensus Type	A/HeJ	A/J	AKR/J	B10.D2-Hc<0> H2 H2-T18/oSnJ	BALB/cJ	BUB	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB	LG/J	LP/J	MOLF	MRL/MpJ	MSM	NZB/BlNJ	NZW/Lac	PERA	SM/J	SPRET/EiJ
rs16822072					SNP	A	A	T	T	A	T	T	T	T	A	T	T	A	T	T	T	A	T	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91015210 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11898	CpG island 11898	1441 bp distal
Madd	MAP-kinase activating death domain	1806 bp upstream
Nr1h3	nuclear receptor subfamily 1, group H, member 3	within coordinates
Rr367225	regulatory region 367225	676 bp downstream
Rr397125	regulatory region 397125	1465 bp downstream
Rr560663	regulatory region 560663	1328 bp distal
Rr560664	regulatory region 560664	1947 bp distal
Rr560665	regulatory region 560665	557 bp distal
Tssr25161	transcription start site region 25161	1932 bp upstream
Tssr25162	transcription start site region 25162	1913 bp upstream
Tssr25163	transcription start site region 25163	1805 bp upstream
Tssr25164	transcription start site region 25164	1025 bp upstream
Tssr25165	transcription start site region 25165	966 bp upstream
Tssr25166	transcription start site region 25166	904 bp upstream
Tssr25167	transcription start site region 25167	842 bp upstream