rs211695864 SNP Detail

Summary

• ID
  rs211695864
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:34685534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTAAAATT TTGGCGTCCA
  TAAAGTGTAA TTAGGAGACA GCTATGCTCA TCTGCCTTAA TTATCTTGCC TATAGTTGTA
  GGGTTCAGCA GCTATGGCGG AGACTAACAG CTCTCTACAG AAAGACTGCC TGCCATCCAT
  GACCTGAAAT TATCAATATT CTCATAACTA AGAAGTGAAA ACTCAAATCA CTTTTTTTTT
  K
  GGGGGGGGGG CTGTGTTAAA GGTCCCTGGT TCAAAAAAAG CAAGATAATT TAAATACTAA
  AGATGTTTAA CTCCAGAAAA CATACTTTTT TTTTTTTCCT TTCCTTGAGA CAGGGTCTCT
  CTATGTAGCT CTGGCTGGCC TGGTACTTGC TATGTAGAGC AAGCTGACCT TGATACAGTT
  CTGCATGCCT CTGCCTCCTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
ss361143762	MGP_WTSI_4_34632783	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	ST/bJ	WSB/EiJ
rs211695864					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss361143762	MGP_WTSI_4_34632783	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:34685534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14121	CpG island 14121	1244 bp proximal
Gm56184	predicted gene, 56184	1349 bp downstream
Rr100808	regulatory region 100808	666 bp proximal
Rr398199	regulatory region 398199	1689 bp upstream
Slc35a1	solute carrier family 35 (CMP-sialic acid transporter), member 1	within coordinates
Tssr41193	transcription start site region 41193	1728 bp downstream
Tssr41194	transcription start site region 41194	1778 bp downstream
Tssr41195	transcription start site region 41195	1813 bp downstream
Tssr41196	transcription start site region 41196	1848 bp downstream
Tssr41197	transcription start site region 41197	1923 bp downstream