rs211716117 SNP Detail

Summary

• ID
  rs211716117
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74530817 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGGACAC GTTGCTAAAG
  GTTGGCGGTC CGAGCACCTG GAGGGTCTCT GAGACACCTT GAAGCTTCCG ATTGTGTAAG
  CACACCTGGC GGGAGAGCAC AACTTTGGAA GGTGTCTTGG TACTTCCACT ATCCTGTAGC
  CAGGGCCACA ATGAATTCCC AGCCTTAGGC CCTGGGTGAG CCTCTCTGCA GAGCCACTGG
  Y
  GCCAGGAACC AGGCACCCTT TTGCTAAAGC TTTGACACAC CGCACCTCTG GCTTACTTCT
  ATCCTGGAGA CCCAGCCGCC AACCCCCATC TCCAAACAAG CGAAAGGGCA CTCTGGAGTA
  ACTCCCCCAG GCCTGCGAGG CTGGCTGGCT CCAGGAGGTC CTAGCCGGTT GGACAGTGAG
  CTTCCACCCC TCCCCACCAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354484974	MGP_WTSI_2_74538530	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211716117					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354484974	MGP_WTSI_2_74538530	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74530817 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11799	CpG island 11799	1148 bp distal
D2Tfv11	DNA segment, Chr 2, Thomas F. Vogt 11	617 bp distal
Gm56188	predicted gene, 56188	533 bp downstream
Gm75671	predicted gene, 75671	368 bp upstream
Hoxd9	homeobox D9	265 bp downstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1584 bp proximal
Rr559359	regulatory region 559359	within coordinates
Rr559360	regulatory region 559360	379 bp proximal
Rr559361	regulatory region 559361	1624 bp proximal
Rr559362	regulatory region 559362	1918 bp proximal