rs211716550 SNP Detail

Summary

• ID
  rs211716550
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:103470925 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGAGGGGT GGCGGTGCGC
  TCGGCGCCTC CCGAAGAAGC CCCGGCTGCT CTGCTGTGTC TGGATCGCGC TGCGGCTCCC
  GGGCTGCGGG GAGCGCCGCC GGCGACTACA TGACAGAGGT TGGACCACAG GAGCGCGTCG
  CCAAGTTCAC TGCCGCCGTG GCTCGGCTGC TGACATGGAC TCCCGCGCGC GGGGCCATGC
  Y
  CACCGCGATC GGCGCTCCGC GCTGCGCCCG AGCCGCCGGG ACTGCGGCTT CTCCCGCTAA
  ACCTGCCTCC GGGACGGAGC GGAGGAGACG GGCAGCCCGC GGAGCCAATG GCAGCGCAGG
  CGCGCTGGTG GGCGGAGGCT GCGGAGCCGC TGGCCGCGCG GGCGTCAGGT AGGGGAGGTG
  GGGCCAGGAG CGGGCCACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389767890	MGP_WTSI_13_104124497	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211716550					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389767890	MGP_WTSI_13_104124497	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:103470925 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6053	CpG island 6053	within coordinates
Gm61190	predicted gene, 61190	366 bp downstream
Gm61201	predicted gene, 61201	1347 bp downstream
Mast4	microtubule associated serine/threonine kinase family member 4	within coordinates
Rr485329	regulatory region 485329	415 bp distal
Rr485330	regulatory region 485330	within coordinates
Rr485331	regulatory region 485331	1526 bp proximal
Tssr120897	transcription start site region 120897	1867 bp downstream
Tssr120898	transcription start site region 120898	1828 bp downstream
Tssr120899	transcription start site region 120899	1809 bp downstream
Tssr123874	transcription start site region 123874	12 bp downstream
Tssr123875	transcription start site region 123875	1404 bp downstream
Tssr123876	transcription start site region 123876	1525 bp downstream
Tssr123877	transcription start site region 123877	1544 bp downstream