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rs211719234 SNP Detail
Summary
  • ID
    rs211719234
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:30305758 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TTTGGTGGCT CGCAGTCCCC
    GGCCGCTCGC CCCGATCTCG GGGTGGGCCC AAGCCGGGGA GTGGCCGCAG AGGGCGGGGC
    TTGCGGAGAC GGACCTCTAG CTCAGCTGTT AGCAGCCCGG CGCTGGGCTC CCGTCACGGG
    GTCACAACGG TAGGCGCTGT CCCGCTCGTG CTCTCCGCCT CCGAAAGCCA CCTTAGCTGT
    Y
    GAGGCGGTCA CGTGCGTTCA AGTCTGACTG GTGTCCTTGA ACGTCACTCT AGGAATGGCA
    GGAGAACACA ACTGTTGACT GGGGACTGTC TCAGATTGCT TGGGTGGAGG CATGCACAAA
    GAAGATGACA GGTGGCCTTG CTCCGCAAGA ATACTGCTGC CATACCTATT CCCTCCATCA
    CCCCTCACCA AAACAAACAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353515404 MGP_WTSI_2_30271266 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211719234 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353515404 MGP_WTSI_2_30271266 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:30305758 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi11436 CpG island 11436 within coordinates
Crat carnitine acetyltransferase 156 bp upstream
Gm16323 predicted gene 16323 408 bp downstream
Ptpa protein phosphatase 2 protein activator 304 bp upstream
Rr554311 regulatory region 554311 1358 bp distal
Rr554312 regulatory region 554312 233 bp distal
Rr554313 regulatory region 554313 within coordinates
Rr554314 regulatory region 554314 407 bp proximal
Tssr17115 transcription start site region 17115 63 bp downstream
Tssr17116 transcription start site region 17116 285 bp upstream
Tssr17117 transcription start site region 17117 334 bp upstream
Tssr17118 transcription start site region 17118 350 bp upstream
Tssr17119 transcription start site region 17119 441 bp upstream
Tssr23369 transcription start site region 23369 1628 bp upstream
Tssr23370 transcription start site region 23370 1566 bp upstream
Tssr23371 transcription start site region 23371 378 bp upstream
Tssr23372 transcription start site region 23372 336 bp upstream
Tssr23373 transcription start site region 23373 317 bp upstream
Tssr23374 transcription start site region 23374 297 bp upstream
Tssr23375 transcription start site region 23375 241 bp upstream
Tssr23376 transcription start site region 23376 186 bp upstream
Tssr23377 transcription start site region 23377 134 bp upstream
Tssr23378 transcription start site region 23378 122 bp upstream
Tssr23379 transcription start site region 23379 38 bp upstream
Tssr23380 transcription start site region 23380 21 bp downstream
Tssr23381 transcription start site region 23381 257 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory