rs211722116 SNP Detail

Summary

• ID
  rs211722116
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:156484905 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAAAGC TGCAGATGAA
  CACAGCACTC AGAAGCCACG AGTTATGGCT ATTGGCATAA ATGAGATAAA CACCCACACC
  ATGCTTTAGA GTTCAGAAAG CCTGATCAGA GGAATTCTGT CACTCAAGTC TTCCCATAGT
  CTGTGAAGCA GGACCATTTT AAGGAAGAGG AAACAGACTT AGAAATATTG AATGCCAGTG
  S
  CCAAATTTCA GGGGCCTTGT GTGAAACACT AACACAGCTC CCTGTGTTTG CTCAGCCCCA
  TGTTAGCACA CATGCATAGC AGTCAGTAGA TAGAATTCAG TCAACTCATT TTATAGTTAC
  GATTGAGAAC AGAGAATGTT TTGAATTCAA TGAGTTTTAA ACTTTTTACT TGGTCTGGTT
  GATGTTTAAC AGACAGCTAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404975675	MGP_WTSI_X_154139841	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211722116					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404975675	MGP_WTSI_X_154139841	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:156484905 () rs orientation: forward

Symbol	Name	Function Class
Rr8402	regulatory region 8402	904 bp distal
Rr8403	regulatory region 8403	within coordinates
Smpx	small muscle protein, X-linked	within coordinates
Tssr162442	transcription start site region 162442	580 bp upstream
Tssr162443	transcription start site region 162443	665 bp upstream
Tssr162444	transcription start site region 162444	854 bp upstream
Tssr162445	transcription start site region 162445	882 bp upstream
Tssr162446	transcription start site region 162446	923 bp upstream
Tssr162447	transcription start site region 162447	940 bp upstream
Tssr162448	transcription start site region 162448	959 bp upstream
Tssr162449	transcription start site region 162449	978 bp upstream
Tssr162450	transcription start site region 162450	1040 bp upstream