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rs211725630 SNP Detail
Summary
  • ID
    rs211725630
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128049 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CTCTTCCATC CCCCCTCTTC TGCCTTCCTT TCCTGCCTCC
TCTTTCATAT CTCACACCTC TACCTCAGCC CCTGCCCTTC CCTTCTTTAT CTTCACCTCA
Y
TTGTCTCCTC CACCTTTCCC TTGCCTCATC TCTTCCTTCC TTCATCTTCT CCTTCTACCT
TCTCTTCCTC CTTTATCTCC TTACCTTTTC CTACTCTTG                       

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss371156105 MGP_WTSI_7_51733995 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C T T T C T T C C C C C C C C C C T C T C C C C C T C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs211725630 SNP C C C C C C C C C C C C C C C C C C C C C C T T T C T T C C C C C C C C C C T C T C C C C C T C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss371156105 MGP_WTSI_7_51733995 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128049 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2224 transcription start site region 2224 1246 bp downstream
Tssr2225 transcription start site region 2225 1206 bp downstream
Tssr2226 transcription start site region 2226 680 bp downstream
Tssr2227 transcription start site region 2227 386 bp upstream
Tssr2228 transcription start site region 2228 1453 bp upstream
Tssr2229 transcription start site region 2229 1729 bp upstream
Tssr2230 transcription start site region 2230 1908 bp upstream
Tssr66220 transcription start site region 66220 1974 bp downstream
Tssr66221 transcription start site region 66221 1955 bp downstream
Tssr66222 transcription start site region 66222 1902 bp downstream
Tssr66223 transcription start site region 66223 1835 bp downstream
Tssr66224 transcription start site region 66224 1812 bp downstream
Tssr66225 transcription start site region 66225 1792 bp downstream
Tssr66226 transcription start site region 66226 1779 bp downstream
Tssr66227 transcription start site region 66227 1738 bp downstream
Tssr66228 transcription start site region 66228 1735 bp downstream
Tssr66229 transcription start site region 66229 1722 bp downstream
Tssr66230 transcription start site region 66230 1702 bp downstream
Tssr66231 transcription start site region 66231 1667 bp downstream
Tssr66232 transcription start site region 66232 1655 bp downstream
Tssr66233 transcription start site region 66233 1633 bp downstream
Tssr66234 transcription start site region 66234 1603 bp downstream
Tssr66235 transcription start site region 66235 1583 bp downstream
Tssr66236 transcription start site region 66236 1556 bp downstream
Tssr66237 transcription start site region 66237 1535 bp downstream
Tssr66238 transcription start site region 66238 1516 bp downstream
Tssr66239 transcription start site region 66239 1465 bp downstream
Tssr66240 transcription start site region 66240 1384 bp downstream
Tssr66241 transcription start site region 66241 1372 bp downstream
Tssr66242 transcription start site region 66242 1292 bp downstream
Tssr66243 transcription start site region 66243 1278 bp downstream
Tssr66244 transcription start site region 66244 1227 bp downstream
Tssr66245 transcription start site region 66245 1165 bp downstream
Tssr66246 transcription start site region 66246 1137 bp downstream
Tssr66247 transcription start site region 66247 1090 bp downstream
Tssr66248 transcription start site region 66248 1049 bp downstream
Tssr66249 transcription start site region 66249 1026 bp downstream
Tssr66250 transcription start site region 66250 1007 bp downstream
Tssr66251 transcription start site region 66251 982 bp downstream
Tssr66252 transcription start site region 66252 951 bp downstream
Tssr66253 transcription start site region 66253 923 bp downstream
Tssr66254 transcription start site region 66254 875 bp downstream
Tssr66255 transcription start site region 66255 848 bp downstream
Tssr66256 transcription start site region 66256 799 bp downstream
Tssr66257 transcription start site region 66257 788 bp downstream
Tssr66258 transcription start site region 66258 745 bp downstream
Tssr66259 transcription start site region 66259 709 bp downstream
Tssr66260 transcription start site region 66260 602 bp downstream
Tssr66261 transcription start site region 66261 581 bp downstream
Tssr66262 transcription start site region 66262 574 bp downstream
Tssr66263 transcription start site region 66263 562 bp downstream
Tssr66264 transcription start site region 66264 538 bp downstream
Tssr66265 transcription start site region 66265 495 bp downstream
Tssr66266 transcription start site region 66266 478 bp downstream
Tssr66267 transcription start site region 66267 441 bp downstream
Tssr66268 transcription start site region 66268 425 bp downstream
Tssr66269 transcription start site region 66269 389 bp downstream
Tssr66270 transcription start site region 66270 354 bp downstream
Tssr66271 transcription start site region 66271 322 bp downstream
Tssr66272 transcription start site region 66272 270 bp downstream
Tssr66273 transcription start site region 66273 252 bp downstream
Tssr66274 transcription start site region 66274 247 bp downstream
Tssr66275 transcription start site region 66275 227 bp downstream
Tssr66276 transcription start site region 66276 207 bp downstream
Tssr66277 transcription start site region 66277 187 bp downstream
Tssr66278 transcription start site region 66278 143 bp downstream
Tssr66279 transcription start site region 66279 98 bp downstream
Tssr66280 transcription start site region 66280 76 bp downstream
Tssr66281 transcription start site region 66281 36 bp downstream
Tssr66282 transcription start site region 66282 19 bp downstream
Tssr66283 transcription start site region 66283 5 bp downstream
Tssr66284 transcription start site region 66284 1 bp upstream
Tssr66285 transcription start site region 66285 16 bp upstream
Tssr66286 transcription start site region 66286 53 bp upstream
Tssr66287 transcription start site region 66287 71 bp upstream
Tssr66288 transcription start site region 66288 107 bp upstream
Tssr66289 transcription start site region 66289 155 bp upstream
Tssr66290 transcription start site region 66290 216 bp upstream
Tssr66291 transcription start site region 66291 245 bp upstream
Tssr66292 transcription start site region 66292 283 bp upstream
Tssr66293 transcription start site region 66293 301 bp upstream
Tssr66294 transcription start site region 66294 322 bp upstream
Tssr66295 transcription start site region 66295 607 bp upstream
Tssr66296 transcription start site region 66296 740 bp upstream
Tssr66297 transcription start site region 66297 783 bp upstream
Tssr66298 transcription start site region 66298 808 bp upstream
Tssr66299 transcription start site region 66299 877 bp upstream
Tssr66300 transcription start site region 66300 884 bp upstream
Tssr66301 transcription start site region 66301 908 bp upstream
Tssr66302 transcription start site region 66302 922 bp upstream
Tssr66303 transcription start site region 66303 963 bp upstream
Tssr66304 transcription start site region 66304 971 bp upstream
Tssr66305 transcription start site region 66305 981 bp upstream
Tssr66306 transcription start site region 66306 1015 bp upstream
Tssr66307 transcription start site region 66307 1072 bp upstream
Tssr66308 transcription start site region 66308 1125 bp upstream
Tssr66309 transcription start site region 66309 1146 bp upstream
Tssr66310 transcription start site region 66310 1184 bp upstream
Tssr66311 transcription start site region 66311 1261 bp upstream
Tssr66312 transcription start site region 66312 1277 bp upstream
Tssr66313 transcription start site region 66313 1298 bp upstream
Tssr66314 transcription start site region 66314 1306 bp upstream
Tssr66315 transcription start site region 66315 1326 bp upstream
Tssr66316 transcription start site region 66316 1385 bp upstream
Tssr66317 transcription start site region 66317 1397 bp upstream
Tssr66318 transcription start site region 66318 1442 bp upstream
Tssr66319 transcription start site region 66319 1465 bp upstream
Tssr66320 transcription start site region 66320 1492 bp upstream
Tssr66321 transcription start site region 66321 1510 bp upstream
Tssr66322 transcription start site region 66322 1530 bp upstream
Tssr66323 transcription start site region 66323 1576 bp upstream
Tssr66324 transcription start site region 66324 1605 bp upstream
Tssr66325 transcription start site region 66325 1635 bp upstream
Tssr66326 transcription start site region 66326 1676 bp upstream
Tssr66327 transcription start site region 66327 1690 bp upstream
Tssr66328 transcription start site region 66328 1706 bp upstream
Tssr66329 transcription start site region 66329 1745 bp upstream
Tssr66330 transcription start site region 66330 1764 bp upstream
Tssr66331 transcription start site region 66331 1778 bp upstream
Tssr66332 transcription start site region 66332 1799 bp upstream
Tssr66333 transcription start site region 66333 1847 bp upstream
Tssr66334 transcription start site region 66334 1859 bp upstream
Tssr66335 transcription start site region 66335 1868 bp upstream
Tssr66336 transcription start site region 66336 1877 bp upstream
Tssr66337 transcription start site region 66337 1895 bp upstream
Tssr66338 transcription start site region 66338 1951 bp upstream
Tssr72199 transcription start site region 72199 1142 bp upstream
Tssr72200 transcription start site region 72200 184 bp upstream
Tssr72201 transcription start site region 72201 305 bp downstream
Tssr72202 transcription start site region 72202 1168 bp downstream
Tssr72203 transcription start site region 72203 1554 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory