rs211747289 SNP Detail

Summary

• ID
  rs211747289
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:49677504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCATA TTGAGCCAGA TACAAATCTG
  Y
  TATAAAATGC TACTGATTCA GACCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325174433	CHEV_16_49857254	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211747289					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:49677504 () rs orientation: forward

Symbol	Name	Function Class
Cd47	CD47 antigen (Rh-related antigen, integrin-associated signal transducer)	within coordinates
Cpgi8307	CpG island 8307	919 bp distal
Gm56621	predicted gene, 56621	1842 bp downstream
Gm60685	predicted gene, 60685	133 bp downstream
Rr370104	regulatory region 370104	988 bp downstream
Rr516742	regulatory region 516742	1765 bp distal
Rr516743	regulatory region 516743	1651 bp distal
Rr516744	regulatory region 516744	894 bp distal
Rr516745	regulatory region 516745	959 bp distal
Tssr4900	transcription start site region 4900	1875 bp downstream
Tssr4901	transcription start site region 4901	1754 bp downstream
Tssr4902	transcription start site region 4902	1644 bp downstream
Tssr4903	transcription start site region 4903	1335 bp downstream
Tssr138728	transcription start site region 138728	1781 bp downstream
Tssr138729	transcription start site region 138729	1419 bp downstream
Tssr138730	transcription start site region 138730	1385 bp downstream
Tssr138731	transcription start site region 138731	1029 bp downstream
Tssr138732	transcription start site region 138732	891 bp downstream
Tssr138733	transcription start site region 138733	810 bp downstream
Tssr138734	transcription start site region 138734	572 bp downstream
Tssr138735	transcription start site region 138735	522 bp downstream
Tssr138736	transcription start site region 138736	739 bp upstream
Tssr141348	transcription start site region 141348	1829 bp upstream
Tssr141349	transcription start site region 141349	1569 bp upstream
Tssr141350	transcription start site region 141350	1298 bp upstream
Tssr141351	transcription start site region 141351	1013 bp upstream
Tssr141352	transcription start site region 141352	761 bp upstream