rs211770852 SNP Detail

Summary

• ID
  rs211770852
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106769710 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGGCGCC ACCCTATAGC
  CAGTAGGATG GGCGGCGGGA GCATGGATCA GAAGCGGTTC CTTGTTTTGA ACTACCACGT
  GGATTGCCGA GCCAATCAAG GGGAACGTCC ACTTTGATTC GCCGGCTTGC TCAGACCCCG
  CTTTAACCTG GGTCAGACGG CAGAACCTCT TAAACGAAAG GTCTCGGCCT GCCTAGTCGT
  Y
  TCCCGTCCTG GGCCTCTGAG GACCTCGCGG CAAGGCTGCG AGCAGAGGCG TTGGTCTACC
  TTCCAAATGG AGGCCATGGG ATCTTGGGAG GTTTTGTTCT CCACTCTTGG AGACACGAGG
  ATGGGAACTG GAGACATTAC CGCCTGGACT GCCCTAATGC TAAGTGCAAG GGCTTTGGCC
  ACTCGCCCTG GAAGGCGGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378838672	MGP_WTSI_9_106794842	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211770852					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378838672	MGP_WTSI_9_106794842	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106769710 () rs orientation: forward

Symbol	Name	Function Class
4930524O07Rik	RIKEN cDNA 4930524O07 gene	within coordinates
Cpgi22278	CpG island 22278	within coordinates
Dock3	dedicator of cyto-kinesis 3	314 bp downstream
Manf	mesencephalic astrocyte-derived neurotrophic factor	573 bp upstream
Rr368849	regulatory region 368849	310 bp downstream
Rr686409	regulatory region 686409	1107 bp distal
Rr686410	regulatory region 686410	990 bp distal
Rr686411	regulatory region 686411	703 bp distal
Rr686412	regulatory region 686412	535 bp distal
Rr686413	regulatory region 686413	287 bp distal
Rr686414	regulatory region 686414	within coordinates
Rr686415	regulatory region 686415	923 bp proximal
Tssr86943	transcription start site region 86943	388 bp downstream
Tssr86944	transcription start site region 86944	36 bp downstream
Tssr86945	transcription start site region 86945	24 bp downstream
Tssr91353	transcription start site region 91353	1138 bp upstream
Tssr91354	transcription start site region 91354	1120 bp upstream
Tssr91355	transcription start site region 91355	1114 bp upstream
Tssr91356	transcription start site region 91356	1073 bp upstream
Tssr91357	transcription start site region 91357	591 bp upstream
Tssr91358	transcription start site region 91358	564 bp upstream
Tssr91359	transcription start site region 91359	541 bp upstream