rs211784568 SNP Detail

Summary

• ID
  rs211784568
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCGCCTGTG CTTGGGATGG
  CAGCTGGGCG GACAAGGGAC CATACAATCC AAAGTGGACC TGAGGTTTAT TGGCGCCTCC
  CCAGGCCACC ATTCCCACCC CTCCCAATAA TTACAAAAGT AAGAAAAATG CCTTTCCCCT
  TCCCCCATTC ATCCCAGGAA AATGTCATAA TTTATGAAGA AAAGACACAG TCCAAGGCAG
  Y
  GGGAGGCCTC AGCCCATCTT CTTCCAGATG GTGAGCGAGG CGGTGAGGAC TCCAGCCACA
  AAGATGGTCA CTGTCTGCCA TGTGGGGGTC CCGAAGTAGG AGAGGAGGCC TTCCTGAGAA
  CAGAGAGATG GGTGTGACTT CAATACCAAA TTGCAGGGGG AAGAAAGAGA TTTCCCATGA
  AGGGATGCTA AGGCGCTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177665	MGP_WTSI_7_52717223	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211784568					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177665	MGP_WTSI_7_52717223	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111277 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bax	BCL2-associated X protein			Coding-NonSynonymous
				mRNA-UTR
Cpgi19061	CpG island 19061			1719 bp distal
Ftl1	ferritin light polypeptide 1			1969 bp upstream
Gm10252	predicted gene 10252			1553 bp downstream
Gm73429	predicted gene, 73429			390 bp upstream
Gm73431	predicted gene, 73431			203 bp downstream
Rr380754	regulatory region 380754			421 bp downstream
Rr646450	regulatory region 646450			1479 bp distal
Rr646451	regulatory region 646451			1744 bp distal
Rr646452	regulatory region 646452			834 bp distal
Rr646453	regulatory region 646453			401 bp distal
Rr646454	regulatory region 646454			within coordinates
Rr646455	regulatory region 646455			1186 bp proximal
Tssr66542	transcription start site region 66542			753 bp downstream
Tssr72398	transcription start site region 72398			1972 bp upstream
Tssr72399	transcription start site region 72399			907 bp upstream
Tssr72400	transcription start site region 72400			876 bp upstream