rs211806579 SNP Detail

Summary

• ID
  rs211806579
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127690234 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCGGACCG CGGCCCAATG
  AAGGCGGGAC CTGGTGGGTT GGGCAGGGTA CTGGGAGGGG CGGGGCCAGG GAGGGGCGGA
  ACCAAGGGAG GTGTAGCATT ATTCCAGTTA GTGCATGAAA CTATGAATGA GGCCATAGGC
  TCCTGAGGGA GGTTGTATGT GTCTGACACC TATTAAAGTA TATGACATCT GTGAAATTGT
  S
  TATCTGTAAC TATCTGTACA CAACAGACAG ATATCCTGTG GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTATGTGT AAAAGACAGA GAGAGAGGAA GAGAGAGAGT GTCAGAGGTG
  AGGAACACTG TAACAGACTA CATGAGGGAG ATTATGTATG AAATCGGCCA TAGGTGCATG
  AGGGAGATTG TATCTGACAG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320957992	CHEV_3_127599503	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211806579					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127690234 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13803	CpG island 13803	62 bp distal
Fam241a	family with sequence similarity 241, member A	262 bp upstream
Rr398009	regulatory region 398009	12 bp downstream
Rr584896	regulatory region 584896	566 bp distal
Rr584897	regulatory region 584897	within coordinates
Tssr35606	transcription start site region 35606	1977 bp upstream
Tssr35607	transcription start site region 35607	1072 bp upstream
Tssr35608	transcription start site region 35608	352 bp upstream
Tssr35609	transcription start site region 35609	315 bp upstream
Tssr35610	transcription start site region 35610	248 bp upstream