rs211820410 SNP Detail

Summary

• ID
  rs211820410
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80633495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGTAAAGT TCTCGTTAGG
  GAAGAAGGCT GAGACAGGCC TTAAAGCCTG CCCGTACCCT ACCCGTGGCA GAGAGGGCGG
  CAGAGACTGT TCCTGCTATA CACCCCACGT TCGCAGACTG CACCTCTCTC AGTTGGGAAC
  GGGCAGAGGG GTCGGAGAAG AAACTAAGCG AGAACCAGAC CCAGTGGGCA CTCTGAGTGA
  K
  AGCTGGGCCA GTCCTGGGCC ACCAGCGGAC GCGGGATCCA GGACAAACGT AGGCTCCTAA
  GGGAGTAAAA AGGATCGGGT GTGCGGAGCA GAGTCCGGGA TGGAAACTTA CTGATGGAGA
  AGCCGCCCGG TTCTTCCTGG GCCACTCTGC AGCGCTCCAG CAACAGGGCT CCGAGGGGCT
  GCGCGAGACA CGGCCATGAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025182	MGP_WTSI_10_80260406	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211820410					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025182	MGP_WTSI_10_80260406	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80633495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	within coordinates
Rr435393	regulatory region 435393	47 bp proximal
Rr435394	regulatory region 435394	548 bp proximal
Rr435395	regulatory region 435395	955 bp proximal
Rr435396	regulatory region 435396	1082 bp proximal
Sf3a2	splicing factor 3a, subunit 2	1074 bp upstream
Tssr94606	transcription start site region 94606	292 bp upstream
Tssr94607	transcription start site region 94607	370 bp upstream
Tssr94608	transcription start site region 94608	952 bp upstream
Tssr94609	transcription start site region 94609	969 bp upstream
Tssr94610	transcription start site region 94610	991 bp upstream
Tssr94611	transcription start site region 94611	1241 bp upstream
Tssr98506	transcription start site region 98506	1288 bp upstream
Tssr98507	transcription start site region 98507	200 bp downstream
Tssr98508	transcription start site region 98508	258 bp downstream
Tssr98509	transcription start site region 98509	308 bp downstream
Tssr98510	transcription start site region 98510	331 bp downstream
Tssr98511	transcription start site region 98511	530 bp downstream
Tssr98512	transcription start site region 98512	559 bp downstream
Tssr98513	transcription start site region 98513	815 bp downstream
Tssr98514	transcription start site region 98514	1194 bp downstream