rs211843501 SNP Detail

Summary

• ID
  rs211843501
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90648939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCT GTCTTGTTTA AACAACACAT
  Y
  TCCTTCTCAT CTTGAAGACG TTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321607434	CHEV_5_90930106	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211843501					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90648939 () rs orientation: forward

Symbol	Name	Function Class
Afp	alpha fetoprotein	within coordinates
Gm43449	predicted gene 43449	within coordinates
Tssr47136	transcription start site region 47136	1439 bp downstream
Tssr47137	transcription start site region 47137	1377 bp downstream
Tssr47138	transcription start site region 47138	676 bp downstream
Tssr47139	transcription start site region 47139	321 bp upstream
Tssr47140	transcription start site region 47140	350 bp upstream
Tssr47141	transcription start site region 47141	364 bp upstream
Tssr47142	transcription start site region 47142	452 bp upstream
Tssr51784	transcription start site region 51784	439 bp downstream