rs211852759 SNP Detail

Summary

• ID
  rs211852759
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72812003 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TAAGAAAGG TTGAATTTAA GAGTAGGAAA
  CACTATCCAC AATACTTTTA TTAGAAATCT ACCTCAAGCA AGAATAAACA TCCCAATTAT
  TGTACTTGTA TGTTTTGTAT GAGGTTGAAG GCAAAGCATT TAAACTAGCT TTGTATACAC
  R
  AACTTGAAAA TTCATGGGGG GGAGGGGCAG TGCATACATC GGTTTCAGAA GCCTTTTTGG
  ACTTGTTTTT TTGTTTTTTG GTTTTTTCTC GTTGGTTGTG GTttttgttt tcaagacagt
  ttcatgtgta gccttggttg tcctgaaact                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320344168	CHEV_2_72819716	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211852759					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72812003 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	563 bp distal
D130067C23Rik	RIKEN cDNA D130067C23 gene	59 bp downstream
Rr373352	regulatory region 373352	330 bp downstream
Rr559064	regulatory region 559064	723 bp distal
Rr559065	regulatory region 559065	1658 bp proximal
Sp3	trans-acting transcription factor 3	1213 bp upstream
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr18363	transcription start site region 18363	1683 bp downstream
Tssr24525	transcription start site region 24525	1991 bp upstream
Tssr24526	transcription start site region 24526	1188 bp upstream
Tssr24527	transcription start site region 24527	747 bp upstream
Tssr24528	transcription start site region 24528	719 bp upstream