rs211857973 SNP Detail

Summary

• ID
  rs211857973
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:17418406 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGGGAATG GCTAAGCAAT
  CACAGGCCCA GCAAGAGACC CATCTCATGG GCAAGCACCA GTCTCTGACA CTAGTAATGA
  CACTCGGTTA TGCTTGTAGA CAGGAGTCTA GCATAGCTAT CTTCTGAGAG TCTCCACCTA
  ACAGCTGTCT CAGACAGATG CAGAAAACTA CAGCCAATCT CTGGATGGAG CTTGGGAACA
  Y
  TTATGGAAGA GTTAGAGGAA GGATTGAGGG TATAGCAACT CCTTAGAAAA ATCAAGACAT
  TTAACCGATC TAGAGAGTTG GGGGTTGGGG GGGGGGGTCT CAGAGACTGA ACCACTAACC
  AAAGAGCAAA CAAGGGATGG ATCTAGCCGC CACTCCCCAA CATTTGTAGC AGATTTGCAG
  CTCAGTTTTT GCATGAGTCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
ss376784914	MGP_WTSI_9_17311554	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ
rs211857973					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	T	C	C	C	T	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376784914	MGP_WTSI_9_17311554	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:17418406 () rs orientation: forward

Symbol	Name	Function Class
D9Mit295	DNA Segment, Chr 9, Massachusetts Institute of Technology 295	649 bp proximal
Rr203187	regulatory region 203187	1766 bp proximal