rs211862957 SNP Detail

Summary

• ID
  rs211862957
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:177808660 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTTCCAAA GGCTATTAAT
  GTTAGTTGTC CTCCCCATAT TGCCTTCTTT AGCATGTCCT CCCATCTCCT CCCCCATTTA
  ATATTTCTTT CCAACTGTAT TTTTTTCAAT ATTTCCTAGT GCTTTAACCC TTAATTTCAC
  ATAGCCTATA GTCACCTGCA AAAGAATTCC CAGTTAATGG ATTACCTTGA CCAAATTAGC
  Y
  TGTGGGTATT ATCTTAAATA ATTGATATAA GAGGGCCCAG TCTACCCTGG GTGTCACATT
  GCCTGGACAG GTTCTCTTGA GTTTTGTAAA AAAGCTAGCA AGCATAAGCC AGTGACTGAG
  CCAGCAGGCA CTGCTCTTCC AAGGTGCTTG CTTTAAGTTC GTTCCCTGTC CTGACTTCCT
  TCAGTGATAG ACTGTGACCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
ss352531582	MGP_WTSI_1_179911225	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	I/LnJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NZB/BlNJ	PL/J	QSi3/Ianm	QSi5/Ianm	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ
rs211862957					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352531582	MGP_WTSI_1_179911225	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:177808660 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1085	CpG island 1085	1994 bp proximal
Gm69850	predicted gene, 69850	within coordinates
Rr14372	regulatory region 14372	860 bp distal
Rr25806	regulatory region 25806	180 bp proximal
Rr29061	regulatory region 29061	1740 bp proximal
Rr396636	regulatory region 396636	1950 bp upstream