rs211875580 SNP Detail

Summary

• ID
  rs211875580
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:113856935 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CTTGTTTTT GAACACAGGA TATTTTTATT
  TCTGGAAGTT TTAAAAAACT TTCAGGAAGg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
  tgtgtgtgtg gagagagaga gagagagagg gagagagaga gagagagaAA TGATGGATCT
  Y
  TCTGCATGTT GATGTGGGTG GTATGGTGCA TGTATGAGTA TGTACTTGAA GTCAtatgtg
  tgtgtagagg tcataagata actagggcaa ccttgggtat tggtcctcag tagccatcca
  tcttgtttGT ATGtttgttt atttatttat                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320881267	CHEV_3_113766204	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211875580					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:113856935 () rs orientation: forward

Symbol	Name	Function Class
Col11a1	collagen, type XI, alpha 1	within coordinates
Rr70132	regulatory region 70132	1466 bp proximal
Rr78696	regulatory region 78696	1867 bp proximal