rs211882635 SNP Detail

Summary

• ID
  rs211882635
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:34155795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGCACT GATTTACCAA
  GGTGGTTTGG ACTCCGGGTG CCGTGGGACC TACCCATGTC CAGCCTGGCC GCGTGCCTCT
  CTGCACCTGC CACCTCACCT GTGCCCCCTT GCCTGCAGCC CTCTGTTTTG CTGTGACCCG
  CTCACTGCTG CTGACATGCC TGGTGCCGGC CGGGCTCCTG GCCCTGCGCT ACTACTACAG
  Y
  CGCAAGGTGA TTCTGGCCTA CCTGGAGTGT GCGCTGCACA CGGACATGGC TGACATTGAG
  CAGTACTACA TGAAGCCACC TGGTGAGTTC TGGAATTCTC CAACTCTGCC TACTCCCTCC
  CTCTTCCCCT TCAGGCACAA GAGGGCCTAA GCTGTGGGAT CCTGGTGTTC TGAGTCTTCT
  GAATGACTGA GGCTTCTAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364490779	MGP_WTSI_5_34341100	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs211882635					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364490779	MGP_WTSI_5_34341100	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:34155795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15746	CpG island 15746	408 bp distal
Nat8l	N-acetyltransferase 8-like	within coordinates
Rr609650	regulatory region 609650	1085 bp proximal
Tssr1458	transcription start site region 1458	1661 bp downstream
Tssr45851	transcription start site region 45851	1857 bp downstream
Tssr45852	transcription start site region 45852	1819 bp downstream
Tssr45853	transcription start site region 45853	1761 bp downstream
Tssr45854	transcription start site region 45854	1722 bp downstream
Tssr45855	transcription start site region 45855	1706 bp downstream
Tssr45856	transcription start site region 45856	1688 bp downstream
Tssr45857	transcription start site region 45857	1670 bp downstream
Tssr50625	transcription start site region 50625	1903 bp upstream
Tssr50626	transcription start site region 50626	862 bp upstream