rs211883277 SNP Detail

Summary

• ID
  rs211883277
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117581118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATGCTGT GAGATTAAAT
  TCAAGAATGA TGTCTTACAA CACTAAGGAA ACATAACAGT GGGGCTGGGG TGGGGGAGCA
  CTGTAAGTTT TCTTTGGGGA AAACTGCCAA TCCTTCTCTA CAGAGATTCA CATACAACTC
  TACATCTGGA AGAAAATATG AATCCGTGCG TTGTGCTTTG TAAGGAAACA GGACACACAT
  W
  TACAGGGAAT AAAATAATCC CCCAAACCAG TACTTAACAC ATAAGCATAA ACAAGGAAGG
  AGGAAAGCAT TATGACTGGA AAAACGAAAA AACCACTAAG TGCTAATGTT ATTTTAACGA
  ATCTCCTTTT ATGTAAACAC AAGGCACCCC AGCAGTGTGC CACTGAAGGT GTATTCCGAG
  GTATTTTATG CTAAACCATT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499174	CHEV_10_117182269	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs211883277					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117581118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	380 bp proximal
Cpgi2239	CpG island 2239	1083 bp proximal
Gm66856	predicted gene, 66856	1268 bp upstream
Rr439608	regulatory region 439608	756 bp distal
Rr439609	regulatory region 439609	1369 bp distal
Rr439610	regulatory region 439610	729 bp proximal
Rr439611	regulatory region 439611	1142 bp proximal
Rr439612	regulatory region 439612	1279 bp proximal
Slc35e3	solute carrier family 35, member E3	within coordinates
Tssr99471	transcription start site region 99471	1118 bp downstream
Tssr99472	transcription start site region 99472	1143 bp downstream